View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6873A_high_14 (Length: 265)
Name: NF6873A_high_14
Description: NF6873A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6873A_high_14 |
 | |
|
| [»] scaffold0428 (1 HSPs) |
| | |
|
| [»] scaffold1749 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-141; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 33059415 - 33059671
Alignment:
| Q |
1 |
tttcatgacatagcgtcctttgtatcaaagtagttgcatggtaacgattgcatatttgttggtgttctatgccgagagtttgaaataggatttgtttttg |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33059415 |
tttcatgacatagcttcctttgtatcaaagtagttgcatggtaacgattgcatatttgttggtgttctatgccgagagtttgaaataggatttgtttttg |
33059514 |
T |
|
| Q |
101 |
tacatcgagtggatcatcatgtaatccataaattttggttacatcgtcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33059515 |
tacatcgagtggatcatcatgtaatccataaattttggttacatcgtcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgta |
33059614 |
T |
|
| Q |
201 |
gcaagggttgttttccctattcctcccattccacaaattcctatagcacgaacacca |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33059615 |
gcaagggttgttttccctattcctcccattccacaaattcctatagcacgaacacca |
33059671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 33359931 - 33360187
Alignment:
| Q |
1 |
tttcatgacatagcgtcctttgtatcaaagtagttgcatggtaacgattgcatatttgttggtgttctatgccgagagtttgaaataggatttgtttttg |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| || |||||||| | ||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
33359931 |
tttcatgacatagcctcctttgtatcaaagtagttgcatggtaacaatcgcatattttattgtgttctatgctgagagtttgaaataggattttcttttg |
33360030 |
T |
|
| Q |
101 |
tacatcgagtggatcatcatgtaatccataaattttggttacatcgtcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgta |
200 |
Q |
| |
|
| |||||||||||| |||||||| || |||||||| |||||||| ||||||||| |||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
33360031 |
tgcatcgagtggattatcatgtagtctgtaaattttagttacatcatcaataaaaaaagatgcactaaattggtgagagatttggccatataaagtcgta |
33360130 |
T |
|
| Q |
201 |
gcaagggttgttttccctattcctcccattccacaaattcctatagcacgaacacca |
257 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
33360131 |
gcaagggttgttttcccaattcctccaattccacaaattcctatagcacgaacacca |
33360187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 44 - 257
Target Start/End: Complemental strand, 33642787 - 33642574
Alignment:
| Q |
44 |
acgattgcatatttgttggtgttctatgccgagagtttgaaataggatttgtttttgtacatcgagtggatcatcatgtaatccataaattttggttaca |
143 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||| | ||||||||| |||||||||||| |||||||||| ||||| |
|
|
| T |
33642787 |
acgattgcatatttgatggtgttctatgccaagagtttgaaataggatttgcttttgtgcttcgagtggaccatcatgtaatctataaattttgcttaca |
33642688 |
T |
|
| Q |
144 |
tcgtcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctattcctcccattccacaaattccta |
243 |
Q |
| |
|
|| ||||||||||| |||||||||||| |||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
33642687 |
tcatcaataaaacatgatgcactaaatcgatgagatatttggtcatataaagccgtagcaagggttgtcttccctattcctcccattccacaaattccta |
33642588 |
T |
|
| Q |
244 |
tagcacgaacacca |
257 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
33642587 |
tagcacgaacacca |
33642574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 22 - 257
Target Start/End: Original strand, 33411826 - 33412061
Alignment:
| Q |
22 |
gtatcaaagtagttgcatggtaacgattgcatatttgttggtgttctatgccgagagtttgaaataggatttgtttttgtacatcgagtggatcatcatg |
121 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||| |||||||||||||||| |||||||| ||||||||| ||||| ||||||| ||| |||||| |
|
|
| T |
33411826 |
gtatcaaatcagttgcactgtaacgattgcatatttgatggtgttctatgccgacagtttgaagtaggatttgcctttgtgcatcgaggggaccatcata |
33411925 |
T |
|
| Q |
122 |
taatccataaattttggttacatcgtcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctatt |
221 |
Q |
| |
|
||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| || |||||| |
|
|
| T |
33411926 |
taatctataaattttgcttacatcgtctataaaacaagatgcactaaattgatgagatatctggccatataaagtcatagcaagggttgtctttcctatt |
33412025 |
T |
|
| Q |
222 |
cctcccattccacaaattcctatagcacgaacacca |
257 |
Q |
| |
|
|| ||||||||||||||||| ||||||| ||||||| |
|
|
| T |
33412026 |
ccgcccattccacaaattccaatagcacaaacacca |
33412061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 33273644 - 33273898
Alignment:
| Q |
1 |
tttcatgacatagcgtcctttgtatcaaagtagttgcatggtaacgattgcatatttgttggtgttctatgccgagagtttgaaataggatttgtttttg |
100 |
Q |
| |
|
||||| |||||||| | ||| |||||||| ||||| | |||| ||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
33273644 |
tttcacgacatagcctacttcgtatcaaattagttacgctgtaatgattgcatatttgatggtgttctatgccgagagtttgaagtaggatttgcttttg |
33273743 |
T |
|
| Q |
101 |
tacatcgagtggatcatcatgtaatccataaattttggttacatcgtcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgta |
200 |
Q |
| |
|
| ||||||| ||| ||||||||||| |||||||||| ||||||| || |||||||| |||||||||||| ||||||||||||| ||||||||| | || |
|
|
| T |
33273744 |
tgcatcgaggggaccatcatgtaatttataaattttgcttacatcatctataaaacaggatgcactaaatcgatgagatatttgatcatataaagccata |
33273843 |
T |
|
| Q |
201 |
gcaagggttgttttccctattcctcccattccacaaattcctatagcacgaacac |
255 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33273844 |
gcaagggttgtcttccctattcctcccattccacaaattcctatagcacgaacac |
33273898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 31567356 - 31567100
Alignment:
| Q |
1 |
tttcatgacatagcgtcctttgtatcaaagtagttgcatggtaacgattgcatatttgttggtgttctatgccgagagtttgaaataggatttgtttttg |
100 |
Q |
| |
|
||||| |||||||| | ||| |||||||| |||| || |||| ||||||||||||||||||| |||||||| | |||||||| ||||||||| ||||| |
|
|
| T |
31567356 |
tttcacgacatagccttcttcgtatcaaattagtggcgctgtaatgattgcatatttgttggtgatctatgccaacagtttgaagtaggatttgcttttg |
31567257 |
T |
|
| Q |
101 |
tacatcgagtggatcatcatgtaatccataaattttggttacatcgtcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgta |
200 |
Q |
| |
|
| ||||||| ||| |||||| | ||| |||||||||| ||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
31567256 |
tgcatcgaggggaccatcatatgatctataaattttgcttacatcatcaatataacaagatgcactaaatcgatgagatatttggccatataaagtctca |
31567157 |
T |
|
| Q |
201 |
gcaagggttgttttccctattcctcccattccacaaattcctatagcacgaacacca |
257 |
Q |
| |
|
||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
31567156 |
gcaagggctgtcttccctattccccccattccacaaattcctatagcacgaacacca |
31567100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 22 - 255
Target Start/End: Original strand, 33306359 - 33306592
Alignment:
| Q |
22 |
gtatcaaagtagttgcatggtaacgattgcatatttgttggtgttctatgccgagagtttgaaataggatttgtttttgtacatcgagtggatcatcatg |
121 |
Q |
| |
|
|||||||| |||||| | ||||||||||| |||| | |||||||||||||| |||||||||||||||||||| |||||| ||| ||||||| ||||||| |
|
|
| T |
33306359 |
gtatcaaatcagttgcgttgtaacgattgcttattagatggtgttctatgcctagagtttgaaataggatttgcttttgtgcattgagtggaccatcatg |
33306458 |
T |
|
| Q |
122 |
taatccataaattttggttacatcgtcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctatt |
221 |
Q |
| |
|
||| | |||||||||||||||||| |||||| | || |||||||||||| |||||||||||||| ||||||||| | ||||||||||||| ||||||||| |
|
|
| T |
33306459 |
taaactataaattttggttacatcatcaatatagcaggatgcactaaatcgatgagatatttggtcatataaagccatagcaagggttgtcttccctatt |
33306558 |
T |
|
| Q |
222 |
cctcccattccacaaattcctatagcacgaacac |
255 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||| |
|
|
| T |
33306559 |
cctcccattccagaaattcctatagcacaaacac |
33306592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 20 - 257
Target Start/End: Original strand, 33402485 - 33402722
Alignment:
| Q |
20 |
ttgtatcaaagtagttgcatggtaacgattgcatatttgttggtgttctatgccgagagtttgaaataggatttgtttttgtacatcgagtggatcatca |
119 |
Q |
| |
|
|||||||||| | ||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||| |||| | ||| ||||| |
|
|
| T |
33402485 |
ttgtatcaaatcaattgcactgtaacgattgcatatttgatggtgttctatgccgagagtttgatgtaggatttgcttttgtgcatcaattgggccatca |
33402584 |
T |
|
| Q |
120 |
tgtaatccataaattttggttacatcgtcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttcccta |
219 |
Q |
| |
|
| ||||| |||||||||| ||||||| ||||| ||||| |||||||||||| ||||||| ||||||||||||||| || ||||||||||||| ||||||| |
|
|
| T |
33402585 |
tataatctataaattttgcttacatcatcaatgaaacaggatgcactaaatcgatgagagatttggccatataaattcatagcaagggttgtcttcccta |
33402684 |
T |
|
| Q |
220 |
ttcctcccattccacaaattcctatagcacgaacacca |
257 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
33402685 |
ttcctcccattccacaaattcttatagcacgaacacca |
33402722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 24 - 257
Target Start/End: Complemental strand, 31561014 - 31560781
Alignment:
| Q |
24 |
atcaaagtagttgcatggtaacgattgcatatttgttggtgttctatgccgagagtttgaaataggatttgtttttgtacatcgagtggatcatcatgta |
123 |
Q |
| |
|
|||||| ||||||| |||| ||||||||||||| | |||||||||||||| |||||||| ||||||||| |||||| ||||||| ||| ||||| | |
|
|
| T |
31561014 |
atcaaattagttgcgctgtaatgattgcatatttgattgtgttctatgccgacagtttgaagtaggatttgcttttgtgcatcgaggggaccatcacctg |
31560915 |
T |
|
| Q |
124 |
atccataaattttggttacatcgtcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctattcc |
223 |
Q |
| |
|
||| |||||||||| ||||||| ||||||||||| |||||||||||| ||||||||||||||||||| |||||| ||||||||| ||| ||||||||||| |
|
|
| T |
31560914 |
atctataaattttgcttacatcatcaataaaacaggatgcactaaatcgatgagatatttggccatacaaagtcatagcaagggctgtcttccctattcc |
31560815 |
T |
|
| Q |
224 |
tcccattccacaaattcctatagcacgaacacca |
257 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |
|
|
| T |
31560814 |
tcccattccacaaattcctataacacgaacacca |
31560781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 45 - 257
Target Start/End: Original strand, 9168670 - 9168882
Alignment:
| Q |
45 |
cgattgcatatttgttggtgttctatgccgagagtttgaaataggatttgtttttgtacatcgagtggatcatcatgtaatccataaattttggttacat |
144 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| || |||||| |||||| |||||||||| ||||||| |||| ||||||||| ||| || |
|
|
| T |
9168670 |
cgattgcatatttgatggtgttctatgccgagagtttgaagtaagatttgcttttgtgcatcgagtgggccatcatgcaatctataaattttacttatat |
9168769 |
T |
|
| Q |
145 |
cgtcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctattcctcccattccacaaattcctat |
244 |
Q |
| |
|
| ||||||||||| |||||||||||| |||||||||||||| |||||||| | | ||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
9168770 |
catcaataaaacaggatgcactaaatcgatgagatatttggtcatataaaaccattgcaagagttgtcttccctattcctcccattccacaaattcctat |
9168869 |
T |
|
| Q |
245 |
agcacgaacacca |
257 |
Q |
| |
|
||||||||||||| |
|
|
| T |
9168870 |
agcacgaacacca |
9168882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 22 - 257
Target Start/End: Original strand, 33389945 - 33390180
Alignment:
| Q |
22 |
gtatcaaagtagttgcatggtaacgattgcatatttgttggtgttctatgccgagagtttgaaataggatttgtttttgtacatcgagtggatcatcatg |
121 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||| ||||||| |||| |||||||||||||||| ||||| |||||| |||| | ||| ||||| |
|
|
| T |
33389945 |
gtatcaaatcagttgcaatgtaacgattgcatatttgatggtgttttatgtcgagagtttgaaatagaatttgcttttgtgcatccaaaggaccatcaca |
33390044 |
T |
|
| Q |
122 |
taatccataaattttggttacatcgtcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctatt |
221 |
Q |
| |
|
||||| ||| |||||| ||||||| |||||||||||| |||||||||| |||||||||||||| ||||||||||| | ||||||||||| ||||||||| |
|
|
| T |
33390045 |
taatctatatattttgcttacatcatcaataaaacaatttgcactaaatcgatgagatatttggtcatataaagtcatggcaagggttgtcttccctatt |
33390144 |
T |
|
| Q |
222 |
cctcccattccacaaattcctatagcacgaacacca |
257 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |
|
|
| T |
33390145 |
cctcccattccacaaattcctatagcatgaacacca |
33390180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 33287394 - 33287646
Alignment:
| Q |
1 |
tttcatgacatagcgtcctttgtatcaaagtagttgcatggtaacgattgcatatttgttggtgttctatgccgagagtttgaaataggatttgtttttg |
100 |
Q |
| |
|
||||| ||| |||| | |||||||||||| |||||||| ||| |||||||||||| || |||| |||||| |||| ||||||| |||||||| ||||| |
|
|
| T |
33287394 |
tttcacgacgtagcctactttgtatcaaattagttgcacggtgacgattgcatatatgatggtcttctattccgacggtttgaagtaggatttccttttg |
33287493 |
T |
|
| Q |
101 |
tacatcgagtggatcatcatgtaatccataaattttggttacatcgtcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgta |
200 |
Q |
| |
|
| ||||||| ||| |||||||||||| | | |||||| ||||| ||||||||||||||| |||||||| |||| |||||||| ||||||||| | || |
|
|
| T |
33287494 |
tgcatcgaggggaccatcatgtaatctaaattttttggcaacatcttcaataaaacaagatccactaaatcgatgggatatttgatcatataaagccata |
33287593 |
T |
|
| Q |
201 |
gcaagggttgttttccctattcctcccattccacaaattcctatagcacgaac |
253 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
33287594 |
gaaagggttgttttccctattcctcccattccacaaattcctattgcacgaac |
33287646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 46 - 257
Target Start/End: Original strand, 33264546 - 33264757
Alignment:
| Q |
46 |
gattgcatatttgttggtgttctatgccgagagtttgaaataggatttgtttttgtacatcgagtggatcatcatgtaatccataaattttggttacatc |
145 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||| ||||||||| |||||| |||| | |||| |||||||||||| | |||||||| ||||||| |
|
|
| T |
33264546 |
gattgcatatttgatggtgttctatgccaagagtttgatgtaggatttgcttttgtgcatctattggaccatcatgtaatctaaaaattttgcttacatc |
33264645 |
T |
|
| Q |
146 |
gtcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctattcctcccattccacaaattcctata |
245 |
Q |
| |
|
||||| ||||| |||||| |||| ||||| | ||||||||||||||| || ||||||||||||| ||||||||||||||||| || |||||||||||| |
|
|
| T |
33264646 |
atcaatgaaacaggatgcatcaaatcgatgacagatttggccatataaattcatagcaagggttgtcttccctattcctcccatcccccaaattcctata |
33264745 |
T |
|
| Q |
246 |
gcacgaacacca |
257 |
Q |
| |
|
|||||||||||| |
|
|
| T |
33264746 |
gcacgaacacca |
33264757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 41 - 257
Target Start/End: Complemental strand, 17439016 - 17438800
Alignment:
| Q |
41 |
gtaacgattgcatatttgttggtgttctatgccgagagtttgaaataggatttgtttttgtacatcgagtggatcatcatgtaatccataaattttggtt |
140 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||| |||||| |||||| | || |||||| |||||||||||| |||||||||| || |
|
|
| T |
17439016 |
gtaacgattgcatatttgatggtgttctatgccaagagtttgaaatatgatttgcttttgtgcttcaagtggaccatcatgtaatctataaattttgctt |
17438917 |
T |
|
| Q |
141 |
acatcgtcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctattcctcccattccacaaattc |
240 |
Q |
| |
|
||||| ||||| |||||||||||| |||| ||||||| ||||||||||||||| | |||||||||||| ||||||||||||||||| || ||||||| |
|
|
| T |
17438916 |
acatcatcaatgaaacaagatgcatcaaatcgatgagagatttggccatataaatccaaagcaagggttgtcttccctattcctcccatcccccaaattc |
17438817 |
T |
|
| Q |
241 |
ctatagcacgaacacca |
257 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
17438816 |
ctatagcacgaacacca |
17438800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 46 - 257
Target Start/End: Original strand, 8657 - 8868
Alignment:
| Q |
46 |
gattgcatatttgttggtgttctatgccgagagtttgaaataggatttgtttttgtacatcgagtggatcatcatgtaatccataaattttggttacatc |
145 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||| ||||||||| |||||| |||| | |||| |||||||||||| | |||||||| ||||||| |
|
|
| T |
8657 |
gattgcatatttgatggtgttctatgccaagagtttgatgtaggatttgcttttgtgcatcaattggaccatcatgtaatctaaaaattttgcttacatc |
8756 |
T |
|
| Q |
146 |
gtcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctattcctcccattccacaaattcctata |
245 |
Q |
| |
|
||||| ||||| |||||| |||| ||||| | ||||||||||||||| || ||||||||||||| ||||||||||||||||| || |||||||||||| |
|
|
| T |
8757 |
atcaatgaaacaggatgcatcaaatcgatgacagatttggccatataaattcatagcaagggttgtcttccctattcctcccatcccccaaattcctata |
8856 |
T |
|
| Q |
246 |
gcacgaacacca |
257 |
Q |
| |
|
||||||||||| |
|
|
| T |
8857 |
acacgaacacca |
8868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 74 - 244
Target Start/End: Complemental strand, 31497082 - 31496912
Alignment:
| Q |
74 |
gagagtttgaaataggatttgtttttgtacatcgagtggatcatcatgtaatccataaattttggttacatcgtcaataaaacaagatgcactaaattga |
173 |
Q |
| |
|
|||||||||| ||| ||||| ||||| |||| |||||| |||||||||||| | |||||||| ||||||| ||||||||||| ||||| ||||||| |
|
|
| T |
31497082 |
gagagtttgatgtagaatttgcttttgaacattgagtggtccatcatgtaatctaaaaattttgcttacatcatcaataaaacatcatgcatcaaattga |
31496983 |
T |
|
| Q |
174 |
tgagatatttggccatataaagtcgtagcaagggttgttttccctattcctcccattccacaaattcctat |
244 |
Q |
| |
|
| ||| |||| |||| |||| ||||||||||| || ||||||||||||||||| |||||||||||||| |
|
|
| T |
31496982 |
ttagagattttagcatacaaagcagtagcaagggtagtcttccctattcctcccatcccacaaattcctat |
31496912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 72 - 243
Target Start/End: Complemental strand, 31477131 - 31476960
Alignment:
| Q |
72 |
ccgagagtttgaaataggatttgtttttgtacatcgagtggatcatcatgtaatccataaattttggttacatcgtcaataaaacaagatgcactaaatt |
171 |
Q |
| |
|
|||||||||||| ||| ||||| ||||| ||||||||||| |||||||||||| | | |||||| ||||||| ||||||||||| |||||| ||||| |
|
|
| T |
31477131 |
ccgagagtttgatgtagaatttgcttttgaacatcgagtggcccatcatgtaatctaaacattttgcttacatcatcaataaaacagcatgcaccaaatt |
31477032 |
T |
|
| Q |
172 |
gatgagatatttggccatataaagtcgtagcaagggttgttttccctattcctcccattccacaaattccta |
243 |
Q |
| |
|
||||||| ||| |||||| | | | |||||||||| ||||||||||| ||||| ||||||||||||| |
|
|
| T |
31477031 |
gatgagaaattctatcatatagaaccatgccaagggttgtcttccctattccacccatcccacaaattccta |
31476960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 243
Target Start/End: Complemental strand, 31502279 - 31502082
Alignment:
| Q |
46 |
gattgcatatttgttggtgttctatgccgagagtttgaaataggatttgtttttgtacatcgagtggatcatcatgtaatccataaattttggttacatc |
145 |
Q |
| |
|
||||||||||||| | ||||||| ||| | |||||| |||| ||||| ||||| ||| | ||||| |||||||||||| | | |||||| ||||||| |
|
|
| T |
31502279 |
gattgcatatttgattgtgttcttcaccgtgtgtttgatatagtatttgcttttgaacaccaagtggtccatcatgtaatctaaacattttgcttacatc |
31502180 |
T |
|
| Q |
146 |
gtcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctattcctcccattccacaaattccta |
243 |
Q |
| |
|
|| ||||||||| |||||| |||||||||||| ||| |||||| | | || |||||||||| ||||||||||| ||||| ||||| ||||||| |
|
|
| T |
31502179 |
atcgataaaacaacatgcaccaaattgatgagaaattctatcatatagaaccctaccaagggttgtcttccctattccacccatcccacagattccta |
31502082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 132 - 243
Target Start/End: Original strand, 31019771 - 31019882
Alignment:
| Q |
132 |
attttggttacatcgtcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctattcctcccattc |
231 |
Q |
| |
|
|||||| ||| ||| |||||||||||| |||| |||||||||||| ||||| |||||||||| ||||| || ||||| ||||||||||| ||||| | |
|
|
| T |
31019771 |
attttgcttagatcatcaataaaacaacgtgcatcaaattgatgagagatttgaccatataaagcagtagccagagttgtcttccctattccacccatcc |
31019870 |
T |
|
| Q |
232 |
cacaaattccta |
243 |
Q |
| |
|
|||||||||||| |
|
|
| T |
31019871 |
cacaaattccta |
31019882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 132 - 243
Target Start/End: Complemental strand, 31489775 - 31489664
Alignment:
| Q |
132 |
attttggttacatcgtcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctattcctcccattc |
231 |
Q |
| |
|
|||||| ||| ||| |||||||||||| |||| |||||||||||| ||||| |||||||||| ||||| || ||||| ||||||||||| ||||| | |
|
|
| T |
31489775 |
attttgcttagatcatcaataaaacaacgtgcatcaaattgatgagagatttgaccatataaagcagtagccagagttgtcttccctattccacccatcc |
31489676 |
T |
|
| Q |
232 |
cacaaattccta |
243 |
Q |
| |
|
|||||||||||| |
|
|
| T |
31489675 |
cacaaattccta |
31489664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 132 - 243
Target Start/End: Original strand, 31029652 - 31029763
Alignment:
| Q |
132 |
attttggttacatcgtcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctattcctcccattc |
231 |
Q |
| |
|
|||||| ||| ||| |||||||||||| |||| |||||||||||| ||||| |||||||||| |||| || ||||| ||||||||||| ||||| | |
|
|
| T |
31029652 |
attttgcttagatcatcaataaaacaacgtgcatcaaattgatgagagatttgaccatataaagcagtagtcagagttgtcttccctattccacccatcc |
31029751 |
T |
|
| Q |
232 |
cacaaattccta |
243 |
Q |
| |
|
|||||||||||| |
|
|
| T |
31029752 |
cacaaattccta |
31029763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 31150385 - 31150430
Alignment:
| Q |
198 |
gtagcaagggttgttttccctattcctcccattccacaaattccta |
243 |
Q |
| |
|
|||||||||||||| ||||||| ||| ||||| ||||||||||||| |
|
|
| T |
31150385 |
gtagcaagggttgtcttccctactccacccatcccacaaattccta |
31150430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1749 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold1749
Description:
Target: scaffold1749; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 153 - 257
Target Start/End: Original strand, 3 - 107
Alignment:
| Q |
153 |
aaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctattcctcccattccacaaattcctatagcacgaa |
252 |
Q |
| |
|
||||| |||||| |||| ||||| | ||||||||||||||| || ||||||||||||| ||||||||||||||||| || |||||||||||| |||||| |
|
|
| T |
3 |
aaacaggatgcatcaaatcgatgacagatttggccatataaattcatagcaagggttgtcttccctattcctcccatcccccaaattcctataacacgaa |
102 |
T |
|
| Q |
253 |
cacca |
257 |
Q |
| |
|
||||| |
|
|
| T |
103 |
cacca |
107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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