View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6873A_high_5 (Length: 436)
Name: NF6873A_high_5
Description: NF6873A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6873A_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 9 - 431
Target Start/End: Complemental strand, 10460668 - 10460246
Alignment:
| Q |
9 |
agcatagatggtaacttatcaataatccccaagacctcacatatggatatgaatttatttccctccttgatcttaacaggtattgacacaggcaaagcct |
108 |
Q |
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| T |
10460668 |
agcatagatggtaacttatcaataatccccaagacctcacatatggatatgaatttatttccctccttgatcttaacaggtattgacacaggcaaagcct |
10460569 |
T |
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| Q |
109 |
tagtagaagaaataaggaaggaaaacgaaagagaaagtgaaagccaaactctattgttggaacctttgctagcattgactggatcattaacaaagtcaaa |
208 |
Q |
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| T |
10460568 |
tagtagaagaaataaggaaggaaaatgaaagagaaagtgaaagccaaactctattgttggaacctttgctagcattgactggatcattaacaaagtcaaa |
10460469 |
T |
|
| Q |
209 |
gccagaaacagtctccaatatccacaaatgtgatattcctacacaattatatctcagtggcaagcttgggatccctgaagccatattataactatatggg |
308 |
Q |
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| T |
10460468 |
gccagaaacagtctccaatatccacaaatgtgatattcctacacaattatatctcagtggcaagcttgggatccctgaagccatattataactatatggg |
10460369 |
T |
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| Q |
309 |
gctgtagagaatcctcttggtgagtttaagaggtgatgggaacactgcacagaagtctactcattttagttcattccactcctaatggagccaactaggt |
408 |
Q |
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| T |
10460368 |
gctgtagagaatcctcttggtgagtttaagaggtgatgggaacactgcacagaagtctactcattttagttcattccactcctaatggagccaactaggt |
10460269 |
T |
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| Q |
409 |
taaaatttttgaagggaattaat |
431 |
Q |
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| T |
10460268 |
taaaatttttgaagggaattaat |
10460246 |
T |
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