View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6873A_low_104 (Length: 250)
Name: NF6873A_low_104
Description: NF6873A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6873A_low_104 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 38567057 - 38567284
Alignment:
| Q |
1 |
gtcgagtttcgagttccactttgtccaaccaatgctgtggttgttccgctcggtatatgaagagagaatccattaaatatcagctcctcaggtcttgccg |
100 |
Q |
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| T |
38567057 |
gtcgactttccacttccactttgtccaaccaatgctgtggttgttccgctcggtatatgaagagagaatccattaaatatcagctcctcaggtcttgccg |
38567156 |
T |
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| Q |
101 |
gataactgaaataaacttctttcaactctatttcactttgaatatcctctaatatttttccatttggatcataagcatctatctctggcctccttttaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38567157 |
gataactgaaataaacttctttcaactctatttcaccttgaatatcctctaatatttttccatttggatcataagcatctatctctggcctccttttaat |
38567256 |
T |
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| Q |
201 |
tgtctcaaacattttgtaagccgccgcc |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
38567257 |
tgtctcaaacattttgtaagccgccgcc |
38567284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 14 - 231
Target Start/End: Original strand, 38525945 - 38526162
Alignment:
| Q |
14 |
ttccactttgtccaaccaatgctgtggttgttccgctcggtatatgaagagagaatccattaaatatcagctcctcaggtcttgccggataactgaaata |
113 |
Q |
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|||||||||||||||||||||| | |||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38525945 |
ttccactttgtccaaccaatgccgcggttgttccgcttgatatatgaagagagaatccattgaatatcagctcctcaggtcttgccggataactgaaata |
38526044 |
T |
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| Q |
114 |
aacttctttcaactctatttcactttgaatatcctctaatatttttccatttggatcataagcatctatctctggcctccttttaattgtctcaaacatt |
213 |
Q |
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|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38526045 |
aacttctttcaactctatctcaccttgaatatcctctaatatttttccatttggatcataagcatctatctctggcctccttttaattgtctcaaacatt |
38526144 |
T |
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| Q |
214 |
ttgtaagccgccgcctga |
231 |
Q |
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|||||||||||||||||| |
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| T |
38526145 |
ttgtaagccgccgcctga |
38526162 |
T |
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