View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6873A_low_108 (Length: 249)
Name: NF6873A_low_108
Description: NF6873A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6873A_low_108 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 62 - 249
Target Start/End: Complemental strand, 29583810 - 29583623
Alignment:
| Q |
62 |
gtgagaaatatcccttaccttacaaaccgatattgtgaggttgagttaggtccaaaccaaaatttaagataatattagagttcattcgtaatgacacttg |
161 |
Q |
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| T |
29583810 |
gtgagaaatatcccttaccttacaaaccgatattgtgaggttgagttaggtccaaaccaaaatttaagataatattagagttcattcgtaatgacacttg |
29583711 |
T |
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| Q |
162 |
gattatgctccagattttccatccttggcatctctaggtttatagtgatactcactcaactcattcgcaaaaagggatgtacactctt |
249 |
Q |
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| T |
29583710 |
gattatgctccagattttccatccttggcatctctaggtttatagtgatactcactcaactcattcgcaaaaagggatgtacactctt |
29583623 |
T |
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Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 29583973 - 29583921
Alignment:
| Q |
1 |
gtaaggcatcataaccaacttatgaatttgctacgctgattaactacagcttt |
53 |
Q |
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| T |
29583973 |
gtaaggcatcataaccaacttctgaatttgctacgttgattaactacagcttt |
29583921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 19809995 - 19809943
Alignment:
| Q |
78 |
accttacaaaccgatattgtgaggttgagttaggtccaaaccaaaatttaaga |
130 |
Q |
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| T |
19809995 |
accttacaagccgattttgtaaggttgagttaggcccaacccaaaatttaaga |
19809943 |
T |
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