View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6873A_low_11 (Length: 423)

Name: NF6873A_low_11
Description: NF6873A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6873A_low_11
NF6873A_low_11
[»] chr5 (23 HSPs)
chr5 (12-223)||(26620096-26620307)
chr5 (237-417)||(12278830-12279011)
chr5 (237-417)||(33430337-33430518)
chr5 (237-417)||(17332521-17332702)
chr5 (237-417)||(31680383-31680564)
chr5 (237-417)||(37254657-37254838)
chr5 (237-417)||(10033943-10034124)
chr5 (239-417)||(16155015-16155194)
chr5 (241-414)||(39657479-39657653)
chr5 (241-417)||(13817997-13818174)
chr5 (237-417)||(26283288-26283469)
chr5 (238-417)||(31501688-31501866)
chr5 (240-417)||(36293591-36293769)
chr5 (237-417)||(39434712-39434893)
chr5 (237-418)||(1776345-1776527)
chr5 (251-417)||(16333846-16334013)
chr5 (244-417)||(19985962-19986136)
chr5 (240-417)||(36291390-36291568)
chr5 (240-417)||(43068896-43069074)
chr5 (237-417)||(28801303-28801503)
chr5 (241-371)||(3155647-3155778)
chr5 (353-417)||(192094-192158)
chr5 (353-417)||(38269366-38269430)
[»] chr7 (21 HSPs)
chr7 (237-417)||(34389026-34389207)
chr7 (245-417)||(37002114-37002287)
chr7 (222-417)||(38638206-38638402)
chr7 (237-417)||(14777077-14777258)
chr7 (237-417)||(35090184-35090365)
chr7 (229-417)||(40919973-40920162)
chr7 (239-417)||(36658199-36658378)
chr7 (237-417)||(26624761-26624943)
chr7 (237-417)||(3114066-3114247)
chr7 (241-417)||(43184438-43184615)
chr7 (237-418)||(36630832-36631014)
chr7 (237-417)||(5555503-5555684)
chr7 (237-417)||(8867701-8867882)
chr7 (237-418)||(8394141-8394323)
chr7 (237-417)||(7002741-7002922)
chr7 (237-417)||(7048612-7048793)
chr7 (241-417)||(33685584-33685761)
chr7 (353-417)||(10868426-10868490)
chr7 (287-346)||(10868514-10868575)
chr7 (359-417)||(26787732-26787790)
chr7 (237-266)||(10876829-10876858)
[»] chr4 (33 HSPs)
chr4 (237-417)||(30216712-30216893)
chr4 (237-417)||(3292866-3293047)
chr4 (237-417)||(43143554-43143735)
chr4 (237-417)||(6690205-6690386)
chr4 (224-410)||(44156654-44156841)
chr4 (240-417)||(42333746-42333924)
chr4 (240-417)||(48989347-48989525)
chr4 (237-417)||(13012204-13012385)
chr4 (237-417)||(20129326-20129507)
chr4 (237-417)||(50205047-50205228)
chr4 (237-417)||(25930724-25930905)
chr4 (237-417)||(47500789-47500970)
chr4 (242-417)||(28877220-28877396)
chr4 (237-417)||(34407254-34407435)
chr4 (245-417)||(35545977-35546150)
chr4 (237-417)||(43355920-43356101)
chr4 (243-417)||(29319675-29319850)
chr4 (237-418)||(36382315-36382496)
chr4 (237-417)||(26439249-26439430)
chr4 (287-417)||(6235587-6235717)
chr4 (245-417)||(17511203-17511377)
chr4 (240-417)||(40529034-40529212)
chr4 (237-417)||(10352854-10353035)
chr4 (240-417)||(26448072-26448249)
chr4 (237-417)||(30077601-30077782)
chr4 (298-417)||(13392851-13392970)
chr4 (298-417)||(13395990-13396109)
chr4 (240-417)||(29995953-29996131)
chr4 (256-417)||(1817752-1817914)
chr4 (240-417)||(48129985-48130175)
chr4 (237-417)||(30109972-30110172)
chr4 (246-313)||(6254569-6254637)
chr4 (353-381)||(4325547-4325575)
[»] chr3 (20 HSPs)
chr3 (237-417)||(45182997-45183178)
chr3 (237-417)||(11018182-11018363)
chr3 (237-417)||(6930864-6931045)
chr3 (240-417)||(22968414-22968592)
chr3 (237-417)||(27935194-27935375)
chr3 (241-417)||(33040973-33041150)
chr3 (237-417)||(40081711-40081890)
chr3 (240-417)||(6269396-6269574)
chr3 (240-417)||(19390165-19390343)
chr3 (237-417)||(39771806-39771987)
chr3 (237-417)||(45335891-45336071)
chr3 (237-417)||(6503539-6503720)
chr3 (237-417)||(19565471-19565652)
chr3 (237-418)||(34084089-34084273)
chr3 (299-417)||(35514341-35514459)
chr3 (221-417)||(5135269-5135485)
chr3 (339-418)||(22922214-22922293)
chr3 (353-417)||(38282543-38282607)
chr3 (222-258)||(19269690-19269726)
chr3 (353-381)||(51262115-51262143)
[»] chr6 (11 HSPs)
chr6 (237-417)||(28996746-28996927)
chr6 (237-417)||(18339122-18339303)
chr6 (237-417)||(398633-398814)
chr6 (237-417)||(34948728-34948909)
chr6 (241-414)||(13837841-13838015)
chr6 (238-417)||(29743300-29743480)
chr6 (222-417)||(33229306-33229502)
chr6 (238-316)||(31028435-31028514)
chr6 (237-305)||(24697899-24697968)
chr6 (221-268)||(3050079-3050126)
chr6 (353-381)||(11971095-11971123)
[»] chr2 (26 HSPs)
chr2 (237-417)||(45418599-45418780)
chr2 (237-417)||(41251604-41251785)
chr2 (239-417)||(12756807-12756986)
chr2 (237-417)||(44084573-44084754)
chr2 (240-417)||(35962734-35962912)
chr2 (237-417)||(6403774-6403955)
chr2 (237-417)||(42440002-42440183)
chr2 (237-417)||(771015-771196)
chr2 (237-417)||(8147367-8147549)
chr2 (237-417)||(17445011-17445190)
chr2 (237-414)||(32127114-32127292)
chr2 (237-417)||(16405616-16405797)
chr2 (237-417)||(31581592-31581773)
chr2 (240-417)||(18981635-18981813)
chr2 (237-417)||(8059303-8059484)
chr2 (246-418)||(2285887-2286060)
chr2 (287-417)||(26162672-26162799)
chr2 (240-357)||(2958131-2958248)
chr2 (245-346)||(4555250-4555354)
chr2 (237-417)||(26237973-26238140)
chr2 (353-417)||(4555162-4555226)
chr2 (353-417)||(7072501-7072564)
chr2 (353-417)||(45121368-45121432)
chr2 (231-299)||(34905959-34906028)
chr2 (237-346)||(7072589-7072703)
chr2 (353-381)||(31392932-31392960)
[»] scaffold0502 (1 HSPs)
scaffold0502 (237-417)||(5246-5427)
[»] scaffold0041 (1 HSPs)
scaffold0041 (229-417)||(52933-53122)
[»] chr8 (16 HSPs)
chr8 (237-417)||(4404024-4404205)
chr8 (237-417)||(16787995-16788176)
chr8 (237-417)||(23402124-23402305)
chr8 (237-417)||(34136795-34136976)
chr8 (243-417)||(9877242-9877417)
chr8 (237-417)||(29728356-29728537)
chr8 (237-417)||(3648764-3648945)
chr8 (237-417)||(39914531-39914711)
chr8 (239-418)||(15838304-15838483)
chr8 (237-417)||(36408567-36408748)
chr8 (295-417)||(42231012-42231134)
chr8 (220-346)||(3435268-3435397)
chr8 (237-409)||(2729174-2729347)
chr8 (353-417)||(40470445-40470509)
chr8 (222-346)||(40470533-40470659)
chr8 (353-417)||(378604-378668)
[»] scaffold0154 (1 HSPs)
scaffold0154 (237-417)||(31496-31677)
[»] scaffold2142 (1 HSPs)
scaffold2142 (237-417)||(538-719)
[»] scaffold0002 (1 HSPs)
scaffold0002 (237-417)||(480427-480608)
[»] chr1 (14 HSPs)
chr1 (237-417)||(26144271-26144452)
chr1 (241-417)||(3829004-3829180)
chr1 (237-417)||(17445329-17445510)
chr1 (241-417)||(32982026-32982203)
chr1 (237-417)||(35907568-35907749)
chr1 (237-417)||(42310911-42311092)
chr1 (237-417)||(7433461-7433642)
chr1 (240-417)||(321347-321525)
chr1 (243-417)||(41972226-41972420)
chr1 (250-417)||(33489716-33489903)
chr1 (353-417)||(28463231-28463295)
chr1 (238-326)||(23313255-23313345)
chr1 (353-381)||(25017522-25017550)
chr1 (353-381)||(32379867-32379895)
[»] scaffold0069 (1 HSPs)
scaffold0069 (240-393)||(17861-18015)


Alignment Details
Target: chr5 (Bit Score: 176; Significance: 1e-94; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 12 - 223
Target Start/End: Original strand, 26620096 - 26620307
Alignment:
Q  12 atgaagtgtggagaacactttttatgaaagaaaactcggagagggagtttccagccagaatcaaatcatcaacataaaccagtaaaagagtgaataatca 111  Q
    |||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  26620096 atgaagcgtggagaactctttttatgaaagaaaacttggagagggagtttccagccagaatcacatcatcaacataaaccagtaaaagagtgaataatca 26620195  T
Q  112 aagggtggttttcgtgaataaagaatgatctgatgcagcctgtgtgtattcatgttgaccaagcaaagaagttaatctttcatatcattttctactggct 211  Q
    |||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||    
T  26620196 aagggtggttttcgcgaataaagaatgatttgatgcagcttgtgtgtattcatgttgaacaagcaaagaagttaatctttcatatcattttctacttgct 26620295  T
Q  212 tgtttaaggcca 223  Q
    ||||||||||||    
T  26620296 tgtttaaggcca 26620307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 237 - 417
Target Start/End: Complemental strand, 12279011 - 12278830
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaaccaaaag-ctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||||| ||||||||||||||||||||||||||||| |||| |||| | |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  12279011 cgcccggactcgatcgataatttttgcacattagacccaacccaaaggccaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcac 12278912  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12278911 acgcaaataggtctcggaattttatttagcacactattgacaggttcatctctcttattttaacgggttaattgttcaaatt 12278830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 237 - 417
Target Start/End: Original strand, 33430337 - 33430518
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||||||||||||||||||||||||| ||||||||| |||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  33430337 cgcccgggctcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcac 33430436  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  33430437 acgcaaataggtctcggaattttatttagcacactattgacgggttcatctctcttattttaacgggttaattgttcaaatt 33430518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 237 - 417
Target Start/End: Complemental strand, 17332702 - 17332521
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    |||||||||||||||||||||||||||| |||||||| |||| |||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  17332702 cgcccgggctcgatcgataatttttgcatattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattttcac 17332603  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    |||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||    
T  17332602 acgcaaataggtctcggaattttatttagcacactattgacggattcatctctcttattttaacgggttaattgttcaaatt 17332521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 237 - 417
Target Start/End: Original strand, 31680383 - 31680564
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||||||||||||||||||||||| | ||||||||| |||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  31680383 cgcccgggctcgatcgataatttttccgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcac 31680482  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    | |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  31680483 atgcaaataggtctcggaattttatttagcacactattgacgggttcatctctcttattttaacgggttaattgttcaaatt 31680564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 237 - 417
Target Start/End: Original strand, 37254657 - 37254838
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||| ||||||||||||||||||||||||||||||| |||| |||||  |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  37254657 cgcccaggctcgatcgataatttttgcacattagacccaacccaaaagtcaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcac 37254756  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    |||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  37254757 acgcaaataggtctcggaattttatttagcacattattgacgggttcatctctcttattttaacgggttaattgttcaaatt 37254838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 237 - 417
Target Start/End: Original strand, 10033943 - 10034124
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||||||||||||||||||||||||||||||||||  |||| ||||||  ||||||| | |||||||||||||||||||||||||||||||||| ||||    
T  10033943 cgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcac 10034042  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||    
T  10034043 acgcaaataggtcttggaattttatttagcacactattgacgggttcatgtctcttattttaacgggttaattgttcaaatt 10034124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 239 - 417
Target Start/End: Original strand, 16155015 - 16155194
Alignment:
Q  239 cccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacac 337  Q
    ||||||||||||||||||||||||||||||||||  |||| ||||||  ||||||| | ||| |||||||||||||| ||||||||||||||| ||||||    
T  16155015 cccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttataaaaagaaaaatttaggcaatctgaaaattgtcacac 16155114  T
Q  338 gcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  16155115 gcaaataggtcttggaattttatttagcacactattgacagattcatctctcttattttaacgggttaattgttcaaatt 16155194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 241 - 414
Target Start/End: Complemental strand, 39657653 - 39657479
Alignment:
Q  241 cgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacacgc 339  Q
    |||||||||| |||||||||||||||||||||  |||| ||||||| ||||||| | |||||||||||||||||||||||||||||||||| ||||||||    
T  39657653 cgggctcgattgataatttttgcacattagactcaacccaaaagctcattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcacacgc 39657554  T
Q  340 aaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaa 414  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||    
T  39657553 aaataggtcttggaattttatttagcacactattgacgggttcatgtctcttattttaacgggttaattgttcaa 39657479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 241 - 417
Target Start/End: Original strand, 13817997 - 13818174
Alignment:
Q  241 cgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacacgc 339  Q
    ||||||||||||||||||||||||||||||||  |||| ||||||  ||||||| | |||||||||||||||||||||||||||||||||| ||||||||    
T  13817997 cgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcacacgc 13818096  T
Q  340 aaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||    
T  13818097 aaataggtcttggaaatttatttagcacactattgacgggctcatctctcttattttaacgggttaattgttcaaatt 13818174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 237 - 417
Target Start/End: Complemental strand, 26283469 - 26283288
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaaccaaaa-gctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||||||||||||||||||||||||||||||||||  |||||||| | | ||||||| | ||| |||||||||||||||||||||||||||||| ||||    
T  26283469 cgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagttcattaacacatttataaaaagaaaaatttgggcaatctgaaaattgtcac 26283370  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  26283369 acgtaaataggtcttggaattttatttggcacactattgacagtttcatctctcttattttaacgggttaattgttcaaatt 26283288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 238 - 417
Target Start/End: Complemental strand, 31501866 - 31501688
Alignment:
Q  238 gcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcaca 336  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||    
T  31501866 gcccgggctcgatcgataatttttgcacattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcgca 31501767  T
Q  337 cgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||||||||||||| | |||||||||||||||||||||||   |||||  ||||||||||||| ||||||||||||||||||    
T  31501766 cgcaaataggtctcgaaattttatttagcacactattgatgagttca--tctcttattttaacgggttaattgttcaaatt 31501688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 240 - 417
Target Start/End: Complemental strand, 36293769 - 36293591
Alignment:
Q  240 ccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacacg 338  Q
    |||| |||||||||||||||||| |||||||||  |||| ||||||  ||||||| | |||||||||||||||||||||||||||||||||| |||||||    
T  36293769 ccggactcgatcgataatttttgtacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcacacg 36293670  T
Q  339 caaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
     |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||    
T  36293669 taaataggtcttggaattttatttagcacactatttacagtttcatctctcttattttaacgggttaattgttcaaatt 36293591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 237 - 417
Target Start/End: Original strand, 39434712 - 39434893
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||||||||||||||||||||||| ||||||||||  |||| ||||||  ||||||| | |||||||| ||||||||||||||||||||||||| ||||    
T  39434712 cgcccgggctcgatcgataattttttcacattagactcaacccaaaagcccattaacacatttacaaaatgaaaaatttgggcaatctgaaaattgtcac 39434811  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    | | ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  39434812 atgtaaataggtctttgaattttatttagcacactattgacagtttcatctctcttattttaacgggttaattgttcaaatt 39434893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 237 - 418
Target Start/End: Complemental strand, 1776527 - 1776345
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaaccaaaagcta-attaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    |||||||||||||||||||||||||| |||||| |   ||||||||  |  ||||||| | ||||||||||||||||||||||||| |||||||| ||||    
T  1776527 cgcccgggctcgatcgataatttttgtacattaaagtcaaccaaaaagtccattaacacatttacaaaaagaaaaatttgggcaatttgaaaattgtcac 1776428  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaattt 418  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||    
T  1776427 acgcaaataggtcttggaattttatttagcacactatcgacaggttcatctttcttattttaacgggttaattgttcaaattt 1776345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 251 - 417
Target Start/End: Complemental strand, 16334013 - 16333846
Alignment:
Q  251 cgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtct 349  Q
    |||||||||||||||||||||   |||| ||||||  ||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  16334013 cgataatttttgcacattagattcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcacacgcaaataggtct 16333914  T
Q  350 tggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||||||||||||||||||||||||||| | ||||| ||||||||||||  ||||||||||||||||||    
T  16333913 tggaattttatttagcacactattgacggattcatgtctcttattttatagggttaattgttcaaatt 16333846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 244 - 417
Target Start/End: Original strand, 19985962 - 19986136
Alignment:
Q  244 gctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaa 342  Q
    ||||||||||||||||||||||||||||   |||| |||||   |||| || | ||||||||||||||||||||| ||||| |||||| |||||||||||    
T  19985962 gctcgatcgataatttttgcacattagattcaacccaaaagtccattagcacatttacaaaaagaaaaatttgggtaatctaaaaattatcacacgcaaa 19986061  T
Q  343 taggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  19986062 taggtcttgaaattttatttaacacactattgacaggttcatctcccttattttaacgggttaattgttcaaatt 19986136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 240 - 417
Target Start/End: Original strand, 36291390 - 36291568
Alignment:
Q  240 ccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacacg 338  Q
    ||||| |||||| ||||||||||||||||||| |||||| ||||| | ||||||| | ||||||||||||||||||||||||||| |||||| | ||||     
T  36291390 ccgggttcgatcaataatttttgcacattagatctaacctaaaagttcattaacacatttacaaaaagaaaaatttgggcaatctcaaaattattacaca 36291489  T
Q  339 caaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    |||||||||||  |||||||||||| |||||||||||| |||||||||||||||||||||  |||||||||||||||||    
T  36291490 caaataggtctcagaattttatttaacacactattgacgggttcatctctcttattttaacaggttaattgttcaaatt 36291568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 240 - 417
Target Start/End: Original strand, 43068896 - 43069074
Alignment:
Q  240 ccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacacg 338  Q
    |||||||||||| ||||||||| ||||||||||| |||| |||||   ||||||| | |||||||||||||||||||||||||||||||||||| ||| |    
T  43068896 ccgggctcgatcaataattttttcacattagacccaacccaaaagtccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattcttacatg 43068995  T
Q  339 caaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
     ||||| |||| |||||||||||||||||||||||| | | |||||||||||||||||||  |||||||||||||||||    
T  43068996 taaataagtctcggaattttatttagcacactattgccggattcatctctcttattttaacaggttaattgttcaaatt 43069074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 237 - 417
Target Start/End: Original strand, 28801303 - 28801503
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattaga-cctaaccaaaagctaattaacagacttacaaaaagaaaaatttggg--caatctgaaaattctc 333  Q
    ||||| ||||||||||||||||||||||||||||| || ||||||||||  ||||||| |||||||||||||||||||||||   ||| |||||||||||    
T  28801303 cgccctggctcgatcgataatttttgcacattagatccaaaccaaaagcccattaacacacttacaaaaagaaaaatttgggaaaaatatgaaaattctc 28801402  T
Q  334 acacgcaaatagg-----------------tcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaat 416  Q
    |||||||||||||                  ||   ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  28801403 acacgcaaataggctcagaaaagacatttaactcctaattttatttagctcactattgacaggttcatctctcttattttaacgggttaattgttcaaat 28801502  T
Q  417 t 417  Q
    |    
T  28801503 t 28801503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 241 - 371
Target Start/End: Complemental strand, 3155778 - 3155647
Alignment:
Q  241 cgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacacgc 339  Q
    ||||||||||| |||||||||||||||| |||  |||| |||||   ||||||| | ||| |||||||||||||||| ||||||||||||| ||||||||    
T  3155778 cgggctcgatcaataatttttgcacattcgactcaacctaaaagtccattaacacatttataaaaagaaaaatttggacaatctgaaaattgtcacacgc 3155679  T
Q  340 aaataggtcttggaattttatttagcacacta 371  Q
    |||||| |||||||||||||||||||||||||    
T  3155678 aaatagatcttggaattttatttagcacacta 3155647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 353 - 417
Target Start/End: Original strand, 192094 - 192158
Alignment:
Q  353 aattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||| |||||    
T  192094 aattttatttaacacactattgataggttcatctctcttattttaaagggttaattgtttaaatt 192158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 353 - 417
Target Start/End: Complemental strand, 38269430 - 38269366
Alignment:
Q  353 aattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    |||||||||| ||||||||||| ||||||||||||||||||||| | ||||||||||||||||||    
T  38269430 aattttatttggcacactattggcaggttcatctctcttattttgaagggttaattgttcaaatt 38269366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 146; Significance: 9e-77; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 237 - 417
Target Start/End: Complemental strand, 34389207 - 34389026
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  34389207 cgcccgggctcgatcgataatttttgcacattagacccaacccaaaagctaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcac 34389108  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    |||||||||||||| |||||||||||||||||| ||| ||| ||||||||||||||||||||| ||||||||||||||||||    
T  34389107 acgcaaataggtctcggaattttatttagcacattatcgacgggttcatctctcttattttaacgggttaattgttcaaatt 34389026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 245 - 417
Target Start/End: Complemental strand, 37002287 - 37002114
Alignment:
Q  245 ctcgatcgataatttttgcacattagacctaa-ccaaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaat 343  Q
    ||||||||||||||||||||||||||||| || |||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  37002287 ctcgatcgataatttttgcacattagacccaatccaaaagtcaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaat 37002188  T
Q  344 aggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  37002187 aggtcttggaattttatttagcacactattgacgggttcatctctcttattttaacgggttaattgttcaaatt 37002114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 222 - 417
Target Start/End: Complemental strand, 38638402 - 38638206
Alignment:
Q  222 caggggtggtttcaccgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaa 320  Q
    |||||| |||||||||| ||| ||||||| |||||||||||||||||||| | |||| |||||  |||||||| ||||||||||||||||||||||||||    
T  38638402 caggggcggtttcaccgtccgagctcgattgataatttttgcacattagatccaacccaaaagtcaattaacacacttacaaaaagaaaaatttgggcaa 38638303  T
Q  321 tctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||    
T  38638302 tctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacgggttcatctatcttattttaacgggttaattgttcaaatt 38638206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 237 - 417
Target Start/End: Complemental strand, 14777258 - 14777077
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||||||||||||||||||||||||||||||||||  |||| ||||||| ||||||| | |||||||||||||||||||||||||||||||||| ||||    
T  14777258 cgcccgggctcgatcgataatttttgcacattagactcaacccaaaagctcattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcac 14777159  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||    
T  14777158 acgtaaataggtcttggaattttatttagcacactattgacagtttcatcgctcttattttaacgggttaattgttcaaatt 14777077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 237 - 417
Target Start/End: Original strand, 35090184 - 35090365
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||||||||||||| ||||||||||||||||||||| |||| |||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  35090184 cgcccgggctcgatcaataatttttgcacattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggtaatctgaaaattctcac 35090283  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    |||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||| || |||||||||||||||    
T  35090284 acgcaaataggtctcggaattttatttagcacactattgacggattcatctctcttattttaacggattaattgttcaaatt 35090365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 229 - 417
Target Start/End: Complemental strand, 40920162 - 40919973
Alignment:
Q  229 ggtttcaccgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaa 327  Q
    |||||||||| ||||||||||||||||||||||||||||||||  ||||| |||||| |||||||| | |||||||||||||||||||| ||||||||||    
T  40920162 ggtttcaccgtccgggctcgatcgataatttttgcacattagatttaacccaaaagccaattaacacatttacaaaaagaaaaatttggacaatctgaaa 40920063  T
Q  328 attctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||    
T  40920062 attctcacatgcaaataggtctcggaattttatttagcacactattgacgggttcatctctcttattttaacggattaattgttcaaatt 40919973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 239 - 417
Target Start/End: Original strand, 36658199 - 36658378
Alignment:
Q  239 cccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacac 337  Q
    ||||| |||||||||||||||||||||||| |||| |||| |||||| |||||||| ||| ||||||| |||||||||||||||||||||||||||||||    
T  36658199 cccggactcgatcgataatttttgcacattggacccaaccgaaaagccaattaacatactaacaaaaataaaaatttgggcaatctgaaaattctcacac 36658298  T
Q  338 gcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  36658299 gcaaataggtctcggaattttatttagcacactattgacgggttcatctctcttattttaacgggttaattgttcaaatt 36658378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 237 - 417
Target Start/End: Original strand, 26624761 - 26624943
Alignment:
Q  237 cgcccgggctcgat-cgataatttttgcacattagacctaa-ccaaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctca 334  Q
    |||| ||||||||| |||||||||||||| |||||||| || ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26624761 cgcctgggctcgattcgataatttttgcatattagacccaatccaaaagttaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctca 26624860  T
Q  335 cacgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||    
T  26624861 cacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctcttattttaacaggttaattgttcaaatt 26624943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 237 - 417
Target Start/End: Complemental strand, 3114247 - 3114066
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||||||||||||||||||||||||||||||||||  |||| ||||||  ||||||| | |||||||||||||||||||||||||||||||||| ||||    
T  3114247 cgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcac 3114148  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    || |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||    
T  3114147 acacaaataggtcttggaattttatttagcacactattgacgggttcatgtctcttattttaacgggttaattgttcaaatt 3114066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 241 - 417
Target Start/End: Complemental strand, 43184615 - 43184438
Alignment:
Q  241 cgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacacgc 339  Q
    ||||||||||||||||||||| | ||| |||| ||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  43184615 cgggctcgatcgataatttttacgcatcagacttaacccaaaagccaattaacatacttacaaaaagaaaaatttgggcaatctgaaaattctcacacgc 43184516  T
Q  340 aaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  43184515 aaataggtctctgaattttatttagcacactattgacgggttcatctctcttattttaacgggttaattgttcaaatt 43184438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 237 - 418
Target Start/End: Original strand, 36630832 - 36631014
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaaccaaaagcta-attaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||||||||||||||||||||||||||||||| ||  ||||||||  |  ||||||| | |||||||||||||||||||||||||||||||||| ||||    
T  36630832 cgcccgggctcgatcgataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcac 36630931  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaattt 418  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  36630932 acgcaaataggtcttggaattttagttagcacactattgacgggttcatctctcttattttaacgggttaattgttcaaattt 36631014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 237 - 417
Target Start/End: Original strand, 5555503 - 5555684
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||||||||||||||||||||||||||||||||||  |||| ||||||  ||||||  | |||||||||||||||||||||||||||||||||| ||||    
T  5555503 cgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacgcatttacaaaaagaaaaatttgggcaatctgaaaattgtcac 5555602  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    || |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||    
T  5555603 acacaaataggtcttggaattttatttagcacactattgacgggttcatgtctcttattttaacgggttaattgttcaaatt 5555684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 237 - 417
Target Start/End: Complemental strand, 8867882 - 8867701
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaa-ccaaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    |||||||||||||||||||||||||||| |||||||| || |||||||| |||||| | | |||||||||||||||||||||||||| ||||||| ||||    
T  8867882 cgcccgggctcgatcgataatttttgcatattagacccaatccaaaagccaattaatacatttacaaaaagaaaaatttgggcaatcggaaaattttcac 8867783  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    |||||||||||||| |||||||||||||||||||||||||| | |||||| ||||||||||||||| |||||||||||||||    
T  8867782 acgcaaataggtctcggaattttatttagcacactattgacggattcatcactcttattttaatggattaattgttcaaatt 8867701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 237 - 418
Target Start/End: Original strand, 8394141 - 8394323
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaaccaaaagcta-attaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||||||||||||||||||||||||||||||| ||  ||||||||  |  ||||||| | |||||||| ||||||||||||||||||||||||| ||||    
T  8394141 cgcccgggctcgatcgataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaaaaggaaaaatttgggcaatctgaaaattgtcac 8394240  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaattt 418  Q
    ||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||    
T  8394241 acgtaaataggtcttggaattttatttagcacactattgacgggtttatctctcttattttaacgggttaattgttcaaattt 8394323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 237 - 417
Target Start/End: Original strand, 7002741 - 7002922
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    |||||||||||||||||  ||||||  |||||| ||| |||| |||||| |||||||| || |||||||| |||||||||| |||||| |||||||||||    
T  7002741 cgcccgggctcgatcgacgatttttctacattacacccaacccaaaagccaattaacacacatacaaaaataaaaatttggacaatctaaaaattctcac 7002840  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    |||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  7002841 acgcaaataggtcacggaattttatttagcacactattgacgggttcatctctcttattttaacgggttaattgttcaaatt 7002922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 237 - 417
Target Start/End: Original strand, 7048612 - 7048793
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    |||||||||||||||||  ||||||  |||||| ||| |||| |||||| |||||||| || |||||||| |||||||||| |||||| |||||||||||    
T  7048612 cgcccgggctcgatcgacgatttttctacattacacccaacccaaaagccaattaacacacatacaaaaataaaaatttggacaatctaaaaattctcac 7048711  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    |||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  7048712 acgcaaataggtcacggaattttatttagcacactattgacgggttcatctctcttattttaacgggttaattgttcaaatt 7048793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 241 - 417
Target Start/End: Original strand, 33685584 - 33685761
Alignment:
Q  241 cgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacacgc 339  Q
    ||||||||||||||||||||||||||||| ||| |||| ||||||  ||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  33685584 cgggctcgatcgataatttttgcacattaaacccaacccaaaagcccattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcatacgc 33685683  T
Q  340 aaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||||| ||||   |||||||||||||||||||||||| |||| |||||| ||||||||| || |||||||||||||||    
T  33685684 aaatatgtctcataattttatttagcacactattgacgggtttatctcttttattttaacggattaattgttcaaatt 33685761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 353 - 417
Target Start/End: Complemental strand, 10868490 - 10868426
Alignment:
Q  353 aattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||| |||||||    
T  10868490 aattttatttagcacacttttgacgggttcatctctcttattttaacgggttaattggtcaaatt 10868426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 287 - 346
Target Start/End: Complemental strand, 10868575 - 10868514
Alignment:
Q  287 attaacagacttacaaaaagaaaaatttgggc--aatctgaaaattctcacacgcaaatagg 346  Q
    ||||||| | ||||||||||||||||||||||  ||||||||||||||||| ||||||||||    
T  10868575 attaacacatttacaaaaagaaaaatttgggcaaaatctgaaaattctcacgcgcaaatagg 10868514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 417
Target Start/End: Original strand, 26787732 - 26787790
Alignment:
Q  359 atttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||||| |||||||||| || |||||||||||||||||| | | || |||||||||||||    
T  26787732 atttaacacactattggcatgttcatctctcttattttgaagcgtcaattgttcaaatt 26787790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 266
Target Start/End: Complemental strand, 10876858 - 10876829
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcaca 266  Q
    ||||||||||||||||||||||||||||||    
T  10876858 cgcccgggctcgatcgataatttttgcaca 10876829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 146; Significance: 9e-77; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 237 - 417
Target Start/End: Complemental strand, 30216893 - 30216712
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  30216893 cgcccgggctcgatcgataatttttgcacattagacccaacccaaaagctaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcac 30216794  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    | |||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  30216793 atgcaaatagatctcggaattttatttagcacactattgacgggttcatctctcttattttaacgggttaattgttcaaatt 30216712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 237 - 417
Target Start/End: Complemental strand, 3293047 - 3292866
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||||||||||||||||||||||||| ||||||||| |||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3293047 cgcccgggctcgatcgataatttttgcccattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcac 3292948  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    |||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||    
T  3292947 acgcaaataggtctcggaattttatttagcacactattgacgagttcatctctcttattttaacgggttaattgttcaaatt 3292866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 237 - 417
Target Start/End: Complemental strand, 43143735 - 43143554
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||||||||||||||||||||||||||||||||||  |||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  43143735 cgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcac 43143636  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    |||||||||||||| ||||||||||||||||||| |||||  ||||||||||||||||||||| ||||||||||||||||||    
T  43143635 acgcaaataggtctcggaattttatttagcacacaattgatgggttcatctctcttattttaacgggttaattgttcaaatt 43143554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 237 - 417
Target Start/End: Complemental strand, 6690386 - 6690205
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||||||||||||||||||||||||| ||||||||| |||| |||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  6690386 cgcccgggctcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaaactgaaaattctcac 6690287  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    |||||||||||||| | |||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||    
T  6690286 acgcaaataggtctcgaaattttatttagcacactattgacgggttcgtctctcttattttaacgggttaattgttcaaatt 6690205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 224 - 410
Target Start/End: Original strand, 44156654 - 44156841
Alignment:
Q  224 ggggtggtttcaccgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatc 322  Q
    |||| |||||||| |||||||||| | ||||||||||||||||||||||| |||| |||||| |||||||| |||||||||||||||| ||||| |||||    
T  44156654 ggggcggtttcactgcccgggctcaaccgataatttttgcacattagacccaacccaaaagccaattaacacacttacaaaaagaaaattttggacaatc 44156753  T
Q  323 tgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgt 410  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  44156754 tgaaaattctctcacgcaaataggtctcggaattttatttagcacactattgacgggttcatctctcttattttaatggattaattgt 44156841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 240 - 417
Target Start/End: Complemental strand, 42333924 - 42333746
Alignment:
Q  240 ccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacacg 338  Q
    |||||||| ||||||||||||||||||||||||  |||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  42333924 ccgggctcaatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcacacg 42333825  T
Q  339 caaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||||||||||| ||||||||||||||||||| ||||| | |||||||||||||||||||| || |||||||||||||||    
T  42333824 caaataggtctcggaattttatttagcacacaattgataagttcatctctcttattttaacggattaattgttcaaatt 42333746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 240 - 417
Target Start/End: Original strand, 48989347 - 48989525
Alignment:
Q  240 ccgggctcgatcgataatttttgcacattagacctaac-caaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacacg 338  Q
    ||||| |||||||||||||||||||||||| ||| ||| ||||||   ||||||| |||||||||||||||||||||||||||||||||||||||| |||    
T  48989347 ccgggttcgatcgataatttttgcacattaaacccaactcaaaagtccattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcatacg 48989446  T
Q  339 caaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  48989447 caaataggtctcggaattttatttagcacactattgacgggttcatctctcttattttaacgggttaattgttcaaatt 48989525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 237 - 417
Target Start/End: Original strand, 13012204 - 13012385
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaaccaaaa-gctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    |||||||||||||||||||||||||||||||||||   |||||||| ||| ||||||| | ||| ||||||||||||||||||||| |||||||| ||||    
T  13012204 cgcccgggctcgatcgataatttttgcacattagattcaaccaaaaagctcattaacacatttataaaaagaaaaatttgggcaatttgaaaattgtcac 13012303  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13012304 acgtaaataggtcttggaattttatttggcacactattgacagtttcatctctcttattttaatgggttaattgttcaaatt 13012385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 237 - 417
Target Start/End: Original strand, 20129326 - 20129507
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||||||||||||||||||||||||||||||||||  |||| ||||||  ||||||| | |||||||||||||||||||||||||||||||||| ||||    
T  20129326 cgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcac 20129425  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||| ||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  20129426 acgtaaataggtcttagaattttatttggcacactattgacagtttcatctctcttattttaacgggttaattgttcaaatt 20129507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 237 - 417
Target Start/End: Complemental strand, 50205228 - 50205047
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    |||||| |||||||||||||||||||||||||||| | |||| |||||| |||||||| ||||||||||||||||| |||| ||||||||||||||||||    
T  50205228 cgcccgagctcgatcgataatttttgcacattagatccaacccaaaagccaattaacacacttacaaaaagaaaaaattggacaatctgaaaattctcac 50205129  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| || ||||| |||||||||    
T  50205128 acgcaaataggtcttggaattttatttagcacactattgacgggttcatcactcttattttaacggattaatggttcaaatt 50205047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 237 - 417
Target Start/End: Original strand, 25930724 - 25930905
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||||||||||||| ||||||||||||||||| ||  |||| ||||||  ||||||| | ||||||||||||||||||||||||| |||||||| ||||    
T  25930724 cgcccgggctcgatctataatttttgcacattaaactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatttgaaaattgtcac 25930823  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||    
T  25930824 acgcaaataggtcttggaattttatttagcacactattgacgggttcatctctcttattttaacggattaattgttcaaatt 25930905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 237 - 417
Target Start/End: Original strand, 47500789 - 47500970
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaaccaaaa-gctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||||||||||||||||||||||||||||||||||  |||||||| ||| ||||||| | |||  |||||||||||||||||||| |||||||| ||||    
T  47500789 cgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttatgaaaagaaaaatttgggcaatttgaaaattgtcac 47500888  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  47500889 acgtaaataggtcttggaattttatttggcacactattgacagtttcatctctcttattttaacgggttaattgttcaaatt 47500970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 242 - 417
Target Start/End: Complemental strand, 28877396 - 28877220
Alignment:
Q  242 gggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacacgca 340  Q
    ||||| ||||||||||||||||||||||||   |||| |||||||||||||||  |||| ||||||||||||||||| ||||| ||||||||||||||||    
T  28877396 gggctagatcgataatttttgcacattagattcaacctaaaagctaattaacacgcttataaaaagaaaaatttgggaaatctaaaaattctcacacgca 28877297  T
Q  341 aataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||    
T  28877296 aataggtctcggaattttatttagcacactattgatgggttcatctctcttattttaacgggttaattgttcaaatt 28877220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 237 - 417
Target Start/End: Complemental strand, 34407435 - 34407254
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    |||||||||||| |||||||||||||||||||||||  |||| ||||||  ||||||| | ||| |||||||||||||||||||||||||||||| ||||    
T  34407435 cgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacatttataaaaagaaaaatttgggcaatctgaaaattgtcac 34407336  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||| |||||||||||| ||||||||||  |||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  34407335 acgtaaataggtcttgaaattttatttgacacactattgacagtttcatctctcttattttaacgggttaattgttcaaatt 34407254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 245 - 417
Target Start/End: Original strand, 35545977 - 35546150
Alignment:
Q  245 ctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaat 343  Q
    ||||||||| ||||||||| ||| ||||| |||| |||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  35545977 ctcgatcgacaatttttgcgcatcagacccaacccaaaagccaattaacacacttacaaaaagaaaattttgggcaatctgaaaattctcacacgcaaat 35546076  T
Q  344 aggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
     |||||  ||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||    
T  35546077 gggtctctgaattttatttagcacactattgatgggttcatctctcttattttaacgggttaattgttcaaatt 35546150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 237 - 417
Target Start/End: Original strand, 43355920 - 43356101
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    |||||||||||| |||||||||||||||||||||||  |||| ||||||  ||||||| | ||| |||||||||||||||||||||||||||||| ||||    
T  43355920 cgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacatttataaaaagaaaaatttgggcaatctgaaaattgtcac 43356019  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||| |||||||||||| ||||||||||  |||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  43356020 acgtaaataggtcttgaaattttatttgacacactattgacagtttcatctctcttattttaacgggttaattgttcaaatt 43356101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 243 - 417
Target Start/End: Complemental strand, 29319850 - 29319675
Alignment:
Q  243 ggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaa 341  Q
    ||||||||||||||||||||||||||||||  |||| |||| |  ||||||| | ||||||||||||||||||| |||||||||||||| |||||| |||    
T  29319850 ggctcgatcgataatttttgcacattagactcaacccaaaatcccattaacacatttacaaaaagaaaaatttgagcaatctgaaaattgtcacacacaa 29319751  T
Q  342 ataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||    
T  29319750 ataagtcttggaattttatttagcacactattgacgggttcatgtctcttattttaacgggttaattgttcaaatt 29319675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 237 - 418
Target Start/End: Complemental strand, 36382496 - 36382315
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaaccaaaagcta-attaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||||||||||||| ||||||||||||||||| ||  ||||||||  |  ||||||| | |||||||| ||||||||||| ||||||||||||| ||||    
T  36382496 cgcccgggctcgatccataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaaaa-gaaaaatttggacaatctgaaaattgtcac 36382398  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaattt 418  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||    
T  36382397 acgcaaataggtcttggaattttatttagcacactattgacgggttcatctctcttatcttaacgggttaattgttcaaattt 36382315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 237 - 417
Target Start/End: Complemental strand, 26439430 - 26439249
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    |||||||||||| |||||||||||||||||||||||  |||| ||||||  ||||||| | ||| |||||||||||||||||||||||||||||| ||||    
T  26439430 cgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacatttataaaaagaaaaatttgggcaatctgaaaattgtcac 26439331  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||| |||||||||||| ||||||||||  |||||||||||||| ||||||||||| ||||||| ||||||||||||||||||    
T  26439330 acgtaaataggtcttgaaattttatttgacacactattgacagtttcatctctctaattttaacgggttaattgttcaaatt 26439249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 287 - 417
Target Start/End: Original strand, 6235587 - 6235717
Alignment:
Q  287 attaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatct 386  Q
    ||||||| | ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6235587 attaacacatttacaaaaagaaaaatttgggcaatttgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacgggttcatct 6235686  T
Q  387 ctcttattttaatgggttaattgttcaaatt 417  Q
    |||||||||||| ||||||||||||||||||    
T  6235687 ctcttattttaacgggttaattgttcaaatt 6235717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 245 - 417
Target Start/End: Complemental strand, 17511377 - 17511203
Alignment:
Q  245 ctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaat 343  Q
    ||||||||||||||||||||||||||||  |||| ||||||  ||||||| | ||||||||||||||||||||||||| |||||||| | ||||||||||    
T  17511377 ctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatttgaaaattgttacacgcaaat 17511278  T
Q  344 aggtcttgg-aattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||||||||| |||||||||||||||| ||||||  ||||||||||||||||||||| ||||||||||||||||||    
T  17511277 aggtcttggaaattttatttagcacattattgatcggttcatctctcttattttaacgggttaattgttcaaatt 17511203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 240 - 417
Target Start/End: Original strand, 40529034 - 40529212
Alignment:
Q  240 ccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacacg 338  Q
    |||| ||||||||||||||||||||||||| ||  |||| |||| || ||||||| | |||||||||||||||||||| |||| |||||||| ||||| |    
T  40529034 ccggactcgatcgataatttttgcacattaaactcaacctaaaaactcattaacacatttacaaaaagaaaaatttggacaatttgaaaattgtcacatg 40529133  T
Q  339 caaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| || |||||||||||||||    
T  40529134 caaataggtcttggaattttatttagcacactattgacgggttcatatctcttattttaacggattaattgttcaaatt 40529212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 237 - 417
Target Start/End: Complemental strand, 10353035 - 10352854
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaaccaaaagcta-attaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||  |  ||||||| | |||||||| ||||||||||||||||||||||||||| ||    
T  10353035 cgcccgggctcaatcgataatttttgcacattagacccaaccaaaaagtccattaacacatttacaaaaggaaaaatttgggcaatctgaaaattcttac 10352936  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    |||||||||||||| ||||||||||||||||||| | || | | |||||||||||||||||||  |||||||||||||||||    
T  10352935 acgcaaataggtctcggaattttatttagcacaccagtgtcggattcatctctcttattttaacaggttaattgttcaaatt 10352854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 240 - 417
Target Start/End: Original strand, 26448072 - 26448249
Alignment:
Q  240 ccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacacg 338  Q
    |||| ||||||||||||||||||||||||| | |||||| |||||   ||||||| ||||||||||| |||||||||||||||||||||||||||| ||     
T  26448072 ccggactcgatcgataatttttgcacattaaatctaacccaaaagtccattaacacacttacaaaaa-aaaaatttgggcaatctgaaaattctcataca 26448170  T
Q  339 caaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||||||||| | |||||||||||||||||||||||| | | || |||||| ||||||||| ||||||||||||||||||    
T  26448171 caaataggtttcggaattttatttagcacactattggcggatttatctcttttattttaacgggttaattgttcaaatt 26448249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 237 - 417
Target Start/End: Complemental strand, 30077782 - 30077601
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaaccaaaa-gctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||| ||||| |||||||| |||||||||||||||| |||||||| | | ||||||| | |||||||||||||||||||| ||||||||||||| | ||    
T  30077782 cgcccaggctcaatcgataaattttgcacattagacccaaccaaaaagttcattaacacatttacaaaaagaaaaatttggacaatctgaaaatttttac 30077683  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    || ||||||||||||| ||||||||||||||||||| || | | |||||||||||||||||||  | |||||||||||||||    
T  30077682 acacaaataggtcttgaaattttatttagcacactagtgccggattcatctctcttattttaacagattaattgttcaaatt 30077601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 298 - 417
Target Start/End: Complemental strand, 13392970 - 13392851
Alignment:
Q  298 tacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttatttta 397  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||  | ||||||||||||||||||    
T  13392970 tacaaaaagaaaaatttgggcaatctaaaaattctcacacgcaaataggtctcgaaattttatttagcacactattgaatgattcatctctcttatttta 13392871  T
Q  398 atgggttaattgttcaaatt 417  Q
    | ||||||||||||||||||    
T  13392870 acgggttaattgttcaaatt 13392851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 298 - 417
Target Start/End: Complemental strand, 13396109 - 13395990
Alignment:
Q  298 tacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttatttta 397  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||  | ||||||||||||||||||    
T  13396109 tacaaaaagaaaaatttgggcaatctaaaaattctcacacgcaaataggtctcgaaattttatttagcacactattgaatgattcatctctcttatttta 13396010  T
Q  398 atgggttaattgttcaaatt 417  Q
    | ||||||||||||||||||    
T  13396009 acgggttaattgttcaaatt 13395990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 240 - 417
Target Start/End: Complemental strand, 29996131 - 29995953
Alignment:
Q  240 ccgggctcgatcgataatttttgcacattagacctaaccaaaagcta-attaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacacg 338  Q
    |||| |||||||||||||||||| |||||||||  ||||||||  |  ||||||| | |||| |||||||||||||||||||||||||||||||  ||||    
T  29996131 ccggactcgatcgataatttttgtacattagactcaaccaaaaagtccattaacacatttacgaaaagaaaaatttgggcaatctgaaaattcttgcacg 29996032  T
Q  339 caaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||||||| ||| ||||||||||| |||||||||||||| | ||||||||| |||||||||  |||||||||||||||||    
T  29996031 caaatagttctcggaattttattaagcacactattgacggattcatctctattattttaacaggttaattgttcaaatt 29995953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 256 - 417
Target Start/End: Original strand, 1817752 - 1817914
Alignment:
Q  256 atttttgcacattagacctaa-ccaaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaa 354  Q
    |||||||||||||||| | || |||||||   ||||| | | ||| ||||||||||||||||||||||| |||||||| |||||||||||||||| ||||    
T  1817752 atttttgcacattagatccaatccaaaagtccattaatacatttataaaaagaaaaatttgggcaatctaaaaattcttacacgcaaataggtctcggaa 1817851  T
Q  355 ttttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||||||||| |||||||||| | | |||||||||||||||||||  |||||||||||||||||    
T  1817852 ttttatttaacacactattgtcggattcatctctcttattttaacaggttaattgttcaaatt 1817914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 240 - 417
Target Start/End: Original strand, 48129985 - 48130175
Alignment:
Q  240 ccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacacg 338  Q
    ||||||||||||||||||||||||| |||||||| |||| ||||||| ||||||| |||||||||||||||||||||||     |||||| |||||||||    
T  48129985 ccgggctcgatcgataatttttgcatattagacccaacccaaaagctcattaacacacttacaaaaagaaaaatttggg-----tgaaaactctcacacg 48130079  T
Q  339 caaataggtcttgg------------------aattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    |||||||| || ||                  |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  48130080 caaatagg-ctcggaaaaaacatttacctcctaattttatttagcacactattgacgggttcatctctcttattttaacgggttaattgttcaaatt 48130175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 237 - 417
Target Start/End: Original strand, 30109972 - 30110172
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattaga-cctaaccaaaagctaattaacagacttacaaaaagaaaaatttgggc--aatctgaaaattctc 333  Q
    ||||||| ||||||||||||||||||||||||||| || |||| ||||   ||||||| |||||||||||||||||||||| |  ||| |||||| ||||    
T  30109972 cgcccggactcgatcgataatttttgcacattagacccaaacccaaagaccattaacacacttacaaaaagaaaaatttggacaaaatatgaaaaatctc 30110071  T
Q  334 acacgcaaataggtcttgg------------------aattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaa 415  Q
    ||||||||||||| || ||                  |||||||||||||||||||||||| |||||||||||||| |||||| ||||||| ||||||||    
T  30110072 acacgcaaatagg-ctcggaaaatacatttaccacctaattttatttagcacactattgacgggttcatctctcttgttttaacgggttaagtgttcaaa 30110170  T
Q  416 tt 417  Q
    ||    
T  30110171 tt 30110172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 313
Target Start/End: Original strand, 6254569 - 6254637
Alignment:
Q  246 tcgatcgataatttttgcacattagacctaa-ccaaaagctaattaacagacttacaaaaagaaaaatt 313  Q
    |||||||||||||||||||||||| ||| || |||||||  |||||||| |||| |||||| |||||||    
T  6254569 tcgatcgataatttttgcacattaaacccaacccaaaagacaattaacacacttgcaaaaaaaaaaatt 6254637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 381
Target Start/End: Original strand, 4325547 - 4325575
Alignment:
Q  353 aattttatttagcacactattgacaggtt 381  Q
    |||||||||||||||||||||||||||||    
T  4325547 aattttatttagcacactattgacaggtt 4325575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 237 - 417
Target Start/End: Original strand, 45182997 - 45183178
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||||||||||||||||||||||||| ||||||||| |||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  45182997 cgcccgggctcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcac 45183096  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    || ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  45183097 acacaaataggtctcggaattttatttagcacactattgacgggttcatctctcttattttaacgggttaattgttcaaatt 45183178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 237 - 417
Target Start/End: Complemental strand, 11018363 - 11018182
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||| ||||||||||||||||||||||||||||||  |||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  11018363 cgcccaggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcac 11018264  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||||||||||||||  |||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||    
T  11018263 acgcaaataggtctcagaattttatttagcacacaattgacgggttcatctctcttattttaacgggttaattgttcaaatt 11018182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 237 - 417
Target Start/End: Complemental strand, 6931045 - 6930864
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||||||||||||||||||||||||| ||||||| | |||| |||||| |||||||| | |||||||||||||||||| ||||||||||||||||||||    
T  6931045 cgcccgggctcgatcgataatttttgcgcattagatccaacccaaaagccaattaacacatttacaaaaagaaaaatttaggcaatctgaaaattctcac 6930946  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    |||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||    
T  6930945 acgcaaataggtctcggaattttatttagcacactattgacgagttcatctctcttattttaacgggttaattgttcaaatt 6930864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 240 - 417
Target Start/End: Complemental strand, 22968592 - 22968414
Alignment:
Q  240 ccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacacg 338  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||  ||||||| | ||||||||||||||||||||||||||| |||||| |||||||    
T  22968592 ccgggctcgatcgataatttttgcacattagacttaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctaaaaattgtcacacg 22968493  T
Q  339 caaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
     |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  22968492 taaataggtcttgaaattttatttagcacactattgacagtttcatctctcttattttaacgggttaattgttcaaatt 22968414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 237 - 417
Target Start/End: Original strand, 27935194 - 27935375
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||||||||||||||||||||||||||||||| ||| |||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||     
T  27935194 cgcccgggctcgatcgataatttttgcacattaaacccaacccaaaagctcattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcat 27935293  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||| |||||||||| |||||||||||||||| ||||||||| ||||||||||||||||| ||| ||||||||| ||||||||    
T  27935294 acgaaaataggtctcggaattttatttagcatactattgacgggttcatctctcttattctaacgggttaatttttcaaatt 27935375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 241 - 417
Target Start/End: Original strand, 33040973 - 33041150
Alignment:
Q  241 cgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacacgc 339  Q
    |||||||||| ||||||||||||| |||||||| |||| ||||||||||||||| |||||||||||||||||||||  |||| |||||||| ||||||||    
T  33040973 cgggctcgattgataatttttgcatattagacccaacccaaaagctaattaacacacttacaaaaagaaaaatttgaacaatttgaaaattttcacacgc 33041072  T
Q  340 aaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  33041073 aaataggtctcggaattttatttagcacactattgacgggttcatctctcttattttaacgggttaattgttcaaatt 33041150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 237 - 417
Target Start/End: Complemental strand, 40081890 - 40081711
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaaccaaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcaca 336  Q
    |||||||||||||||||||||||||| |||||||||  ||||||||||| ||||||| | ||||||||||||||||||||||||| |||||||| |||||    
T  40081890 cgcccgggctcgatcgataatttttgaacattagactcaaccaaaagctcattaacacatttacaaaaagaaaaatttgggcaatttgaaaattgtcaca 40081791  T
Q  337 cgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||||||||| |||||| ||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  40081790 cgcaaatagatcttgg-attttttttagcacactattgacgggttcatctctcttattttaacgggttaattgttcaaatt 40081711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 240 - 417
Target Start/End: Complemental strand, 6269574 - 6269396
Alignment:
Q  240 ccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacacg 338  Q
    |||| ||||||||||||||||||||||||||||  |||| ||||||  ||||||| | |||||||||||||||||||||||||||||||||| |||||||    
T  6269574 ccggactcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcacacg 6269475  T
Q  339 caaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
     ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||    
T  6269474 taaataggtcttggaattttatttagcacactattgacagtttcatctatcttattttaacgggttaattgttcaaatt 6269396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 240 - 417
Target Start/End: Original strand, 19390165 - 19390343
Alignment:
Q  240 ccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacacg 338  Q
    ||||| |||||||||||||||||||||||||||  |||| |||||   ||||||| | |||||||||||||||||||||||||||||||||| |||||||    
T  19390165 ccgggttcgatcgataatttttgcacattagactcaacctaaaagtctattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcacacg 19390264  T
Q  339 caaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
     ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  19390265 taaataggtcttggaattttatttagcacactattgacagtttcatctctcttattttaacgggttaattgttcaaatt 19390343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 237 - 417
Target Start/End: Original strand, 39771806 - 39771987
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    |||||||||||| |||||||||||||||||||||||  |||| ||||||  ||||||| | ||| |||||||||||||||||||||||||||||| ||||    
T  39771806 cgcccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacatttataaaaagaaaaatttgggcaatctgaaaattgtcac 39771905  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||| |||||||||||| ||||||||||  |||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  39771906 acgtaaataggtcttgaaattttatttgacacactattgacagtttcatctctcttattttaacgggttaattgttcaaatt 39771987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 237 - 417
Target Start/End: Original strand, 45335891 - 45336071
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaaccaaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcaca 336  Q
    ||||||| ||| ||||||||||||| ||||||||||| ||||||||  | ||||||| | |||||||||||||||| ||||||||||||||||||| |||    
T  45335891 cgcccggactcaatcgataatttttacacattagacccaaccaaaaagtcattaacacatttacaaaaagaaaaatctgggcaatctgaaaattcttaca 45335990  T
Q  337 cgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||||||||||||||||||||||||||||||||||| || | | |||||||||||||||||||  |||||||||||||||||    
T  45335991 cgcaaataggtcttggaattttatttagcacactagtgccggattcatctctcttattttaacaggttaattgttcaaatt 45336071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 237 - 417
Target Start/End: Complemental strand, 6503720 - 6503539
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    |||||||||||||||||| ||||||||| |||||||  |||| |||||| ||||| || ||||||||||||||||||||  |||||||||||||||||||    
T  6503720 cgcccgggctcgatcgattatttttgcaaattagactcaacccaaaagccaattagcacacttacaaaaagaaaaatttaagcaatctgaaaattctcac 6503621  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    | |||||||||||| ||| ||||||||||||||| |||||  ||||||||||||||||||||| ||||||||||||||||||    
T  6503620 aggcaaataggtctcggatttttatttagcacacaattgatgggttcatctctcttattttaacgggttaattgttcaaatt 6503539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 237 - 417
Target Start/End: Complemental strand, 19565652 - 19565471
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaaccaaaagcta-attaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    |||||||| || ||||||||||||||||||||||||| ||||||||  |  ||||||| | |||||||||||||||||||| ||||||||||||||| ||    
T  19565652 cgcccgggttcaatcgataatttttgcacattagacccaaccaaaaaatccattaacacatttacaaaaagaaaaatttggacaatctgaaaattcttac 19565553  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    |||||||||||||| ||||||||||||||||||||| |  | | |||||||||||||||||||  |||||||||||||||||    
T  19565552 acgcaaataggtctcggaattttatttagcacactagtaccggattcatctctcttattttaacaggttaattgttcaaatt 19565471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 237 - 418
Target Start/End: Complemental strand, 34084273 - 34084089
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaaccaaaagcta-attaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||||| ||||||||||||||||||||||||| |   ||||||||  |  ||||||| | ||||||||||||||||||||||||| |||||||| ||||    
T  34084273 cgcccggactcgatcgataatttttgcacattaaattcaaccaaaaagtccattaacacatttacaaaaagaaaaatttgggcaatatgaaaattatcac 34084174  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctctta--ttttaatgggttaattgttcaaattt 418  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||  ||||||  ||||||||||||||||||    
T  34084173 acgcaaataggtcttggaattttatttagcacactattgatgggttcatctctcttattttttaacaggttaattgttcaaattt 34084089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 299 - 417
Target Start/End: Original strand, 35514341 - 35514459
Alignment:
Q  299 acaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaa 398  Q
    |||||||||||||||||| |||| ||||||||||||| ||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||    
T  35514341 acaaaaagaaaaatttggacaatatgaaaattctcactcgcaaataggtctaggaattttattttgcacactattgacgggttcatctctcttattttaa 35514440  T
Q  399 tgggttaattgttcaaatt 417  Q
     || |||||||||||||||    
T  35514441 cggattaattgttcaaatt 35514459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 221 - 417
Target Start/End: Original strand, 5135269 - 5135485
Alignment:
Q  221 ccaggggtggtttcaccgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggc- 318  Q
    ||||||| |||||||||| || |||||||||||| ||||||| |||||||||| |||| ||||||| ||||||| |||||||||||||||||||||| |     
T  5135269 ccaggggcggtttcaccgtccaggctcgatcgattatttttgtacattagacccaacctaaaagctcattaacacacttacaaaaagaaaaatttggaca 5135368  T
Q  319 -aatctgaaaattctcacacgcaaataggtcttgg------------------aattttatttagcacactattgacaggttcatctctcttattttaat 399  Q
     |||| |||||||||||||| |||||||| || ||                  |||||||||||||||||||||||| |||||||||||||||||||||     
T  5135369 aaatccgaaaattctcacacacaaatagg-ctaggaaaaaaaatttacctcataattttatttagcacactattgacgggttcatctctcttattttaac 5135467  T
Q  400 gggttaattgttcaaatt 417  Q
    ||||||||| ||||||||    
T  5135468 gggttaattattcaaatt 5135485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 339 - 418
Target Start/End: Original strand, 22922214 - 22922293
Alignment:
Q  339 caaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaattt 418  Q
    ||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  22922214 caaatagatcttggaattttatttaacacactattgacgggttcatctctcttattttaacgggttaattgttcaaattt 22922293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 353 - 417
Target Start/End: Original strand, 38282543 - 38282607
Alignment:
Q  353 aattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    |||||||||||||||||||||   |||||||||||||||||| | | ||||||||||||||||||    
T  38282543 aattttatttagcacactattatgaggttcatctctcttattctgaagggttaattgttcaaatt 38282607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 258
Target Start/End: Complemental strand, 19269726 - 19269690
Alignment:
Q  222 caggggtggtttcaccgcccgggctcgatcgataatt 258  Q
    |||||| ||||||||||||||||||||||||||||||    
T  19269726 caggggcggtttcaccgcccgggctcgatcgataatt 19269690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 381
Target Start/End: Original strand, 51262115 - 51262143
Alignment:
Q  353 aattttatttagcacactattgacaggtt 381  Q
    |||||||||||||||||||||||||||||    
T  51262115 aattttatttagcacactattgacaggtt 51262143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 138; Significance: 5e-72; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 237 - 417
Target Start/End: Original strand, 28996746 - 28996927
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    |||||| |||||||||||||||||||| ||||||||| |||| |||||  |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28996746 cgcccgagctcgatcgataatttttgcgcattagacccaacctaaaagtcaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcac 28996845  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  28996846 acgcaaataggtctcggaattttatttagcacactattgacgggttcatctctcttattttaacgggttaattgttcaaatt 28996927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 237 - 417
Target Start/End: Original strand, 18339122 - 18339303
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||||||||||||| ||||||||||||||||||||| || | |||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  18339122 cgcccgggctcgatcaataatttttgcacattagacccaatctaaaagccaattaacacacttacaaaaagaaaattttgggcaatctgaaaattctcac 18339221  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    | |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  18339222 atgcaaataggtctcggaattttatttagcacactattgacgggttcatctctcttattttaacgggttaattgttcaaatt 18339303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 237 - 417
Target Start/End: Original strand, 398633 - 398814
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaaccaaaa-gctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||||||||||||||||||||||||||||||||||  |||||||| ||| ||||||| | ||| ||||||||||||||||||||| |||||||| ||||    
T  398633 cgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttataaaaagaaaaatttgggcaatttgaaaattgtcac 398732  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  398733 acgtaaataggtcttggaattttatttggcacactattgacagtttcatctctcttattttaacgggttaattgttcaaatt 398814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 237 - 417
Target Start/End: Complemental strand, 34948909 - 34948728
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||| ||||||||||||||||||||||||||||||  |||| ||||||  ||||||| | |||||||||||||||||||||||||||||||||| ||||    
T  34948909 cgcccaggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcac 34948810  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    || ||||||| ||||| |||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||    
T  34948809 acacaaatagatcttgaaattttatttagcacactattgacgggttcatgtctcttattttaacgggttaattgttcaaatt 34948728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 241 - 414
Target Start/End: Original strand, 13837841 - 13838015
Alignment:
Q  241 cgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacacgc 339  Q
    |||| ||||||||||||||||| |||||||||  |||| ||||||  || |||| | |||||||||||||||||||||||||||||||||| ||||||||    
T  13837841 cgggttcgatcgataatttttgtacattagactcaacccaaaagcacatcaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcacacgc 13837940  T
Q  340 aaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaa 414  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||    
T  13837941 aaataggtcttggaattttatttagcacactattgacgggttcatgtctcttattttaacgggttaattgttcaa 13838015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 238 - 417
Target Start/End: Original strand, 29743300 - 29743480
Alignment:
Q  238 gcccgggctcgatcgataatttttgcacattagacctaaccaaaa-gctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcaca 336  Q
    |||||||||| ||||||||||||||||||||||||| |||||||| | | ||||||| | ||||| |||||||||||||||||||||||||||||| |||    
T  29743300 gcccgggctcaatcgataatttttgcacattagacccaaccaaaaagttcattaacacatttacagaaagaaaaatttgggcaatctgaaaattcttaca 29743399  T
Q  337 cgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||||||||||||| ||||||||||||||||||||| || | | |||||||||||||||||||  |||||||||||||||||    
T  29743400 cgcaaataggtctcggaattttatttagcacactagtgccggattcatctctcttattttaacaggttaattgttcaaatt 29743480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 222 - 417
Target Start/End: Complemental strand, 33229502 - 33229306
Alignment:
Q  222 caggggtggtttcaccgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaa 320  Q
    ||||||| ||||||||||||||||||||||||| ||||||| |||||||||| |||| |||||   ||||||| | || |||||||||||||||||||||    
T  33229502 caggggtagtttcaccgcccgggctcgatcgatcatttttgtacattagacccaacccaaaagtccattaacacatttccaaaaagaaaaatttgggcaa 33229403  T
Q  321 tctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    |||||||||||| ||||| ||||| |||| || ||||||||||||||||||||| | | |||||||||||||||||||  |||||||||||||||||    
T  33229402 tctgaaaattcttacacgtaaataagtctcgggattttatttagcacactattgccggattcatctctcttattttaacaggttaattgttcaaatt 33229306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 238 - 316
Target Start/End: Complemental strand, 31028514 - 31028435
Alignment:
Q  238 gcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgg 316  Q
    |||||| ||||||||||||||||||||||||||| | |||| ||||||| ||||||| | |||||||||| ||| |||||    
T  31028514 gcccggactcgatcgataatttttgcacattagatccaacctaaaagctcattaacacatttacaaaaaggaaattttgg 31028435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 237 - 305
Target Start/End: Complemental strand, 24697968 - 24697899
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaa-ccaaaagctaattaacagacttacaaaaa 305  Q
    ||||||||||| ||||||||||||| |||||||| || || ||||||||  ||||||| |||||||||||    
T  24697968 cgcccgggctcaatcgataattttttcacattaggcccaacccaaaagcccattaacacacttacaaaaa 24697899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 221 - 268
Target Start/End: Original strand, 3050079 - 3050126
Alignment:
Q  221 ccaggggtggtttcaccgcccgggctcgatcgataatttttgcacatt 268  Q
    ||||||| ||||||| ||||||||||| ||| ||||||||||||||||    
T  3050079 ccaggggcggtttcatcgcccgggctcaatcaataatttttgcacatt 3050126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 381
Target Start/End: Original strand, 11971095 - 11971123
Alignment:
Q  353 aattttatttagcacactattgacaggtt 381  Q
    |||||||||||||||||||||||||||||    
T  11971095 aattttatttagcacactattgacaggtt 11971123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 138; Significance: 5e-72; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 237 - 417
Target Start/End: Original strand, 45418599 - 45418780
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||||||||||||||||||||||||| ||||||| | |||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  45418599 cgcccgggctcgatcgataatttttgcgcattagatccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcac 45418698  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  45418699 acgcaaataggtctctgaattttatttagcacactattgacgggttcatctctcttattttaacgggttaattgttcaaatt 45418780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 237 - 417
Target Start/End: Complemental strand, 41251785 - 41251604
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||||||||||||||||||||||||||||||||||  |||| ||||||  ||||||| | |||||||||||||||||||||||||||||||||| ||||    
T  41251785 cgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcac 41251686  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  41251685 acgtaaataggtcttggaattttatttagcacactattgacagtttcatctctcttattttaacgggttaattgttcaaatt 41251604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 239 - 417
Target Start/End: Complemental strand, 12756986 - 12756807
Alignment:
Q  239 cccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacac 337  Q
    |||||| |||||||||||||||||| ||||||||| |||| |||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  12756986 cccgggttcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgagcaatctgaaaattctcacac 12756887  T
Q  338 gcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  12756886 gcaaataagtctcggaattttatttagcacactattgacgggttcatctctcttattttaacgggttaattgttcaaatt 12756807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 237 - 417
Target Start/End: Complemental strand, 44084754 - 44084573
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaa-ccaaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||||||||||||||||||||||||||||||| ||| || ||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||     
T  44084754 cgcccgggctcgatcgataatttttgcacattaaacccaatccaaaagttcattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcat 44084655  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||    
T  44084654 acgcaaataggtctcagaattttatttagcacactattgacgggttcatctctcttattttaacggattaattgttcaaatt 44084573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 240 - 417
Target Start/End: Original strand, 35962734 - 35962912
Alignment:
Q  240 ccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacacg 338  Q
    |||||||||||||||||||||||||||||||||  |||| ||||||| ||||||| | |||||||||||||| ||||||||||||||||||| ||||||     
T  35962734 ccgggctcgatcgataatttttgcacattagactcaacccaaaagcttattaacacatttacaaaaagaaaattttgggcaatctgaaaattgtcacaca 35962833  T
Q  339 caaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||    
T  35962834 caaataggtcttggaattttatttagcacactattgacgggttcatgtctcttattttaacgggttaattgttcaaatt 35962912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 237 - 417
Target Start/End: Complemental strand, 6403955 - 6403774
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaaccaaaa-gctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||||||||||||||||||||||||||||||||||  |||||||| | | ||||||| | ||| |||||||||||||||||||||||||||||| ||||    
T  6403955 cgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagttcattaacacatttataaaaagaaaaatttgggcaatctgaaaattgtcac 6403856  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  6403855 acgtaaataggtcttggaattttatttggcacactattgacagtttcatctctcttattttaacgggttaattgttcaaatt 6403774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 237 - 417
Target Start/End: Original strand, 42440002 - 42440183
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||||||||||||||||||||||||||||||||||  |||| ||||||  ||||||| | |||||||||||||||||||||||||||||||||| ||||    
T  42440002 cgcccgggctcgatcgataatttttgcacattagactaaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcac 42440101  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    |||||||||||||||| |||||||||||||||||||||||| | ||||| ||||||||||||| ||||||||||||||||||    
T  42440102 acgcaaataggtcttgcaattttatttagcacactattgacggattcatgtctcttattttaacgggttaattgttcaaatt 42440183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 237 - 417
Target Start/End: Original strand, 771015 - 771196
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaaccaaaa-gctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    |||||||||||||||||||| |||||||||||||||| |||||||| ||  ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  771015 cgcccgggctcgatcgataacttttgcacattagacccaaccaaaaagcccattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcac 771114  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    |||||||||||||| |||| ||||||||||||| ||||||| ||||||||| |||||| ||||  |||||||||||||||||    
T  771115 acgcaaataggtctcggaactttatttagcacattattgacgggttcatctatcttatcttaacaggttaattgttcaaatt 771196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 237 - 417
Target Start/End: Original strand, 8147367 - 8147549
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaac-caaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaa-ttctca 334  Q
    ||||||||||||||||||||| ||||||||||||||| ||| ||||||  |||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  8147367 cgcccgggctcgatcgataatctttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgggcaatctgaaaaattctca 8147466  T
Q  335 cacgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||||||||||| ||| ||||||||||||| |||||||||||| ||||||||| ||||||||| | ||||||||||||||||||    
T  8147467 cacgcaaatagatctcggaattttatttaacacactattgacgggttcatctatcttattttgacgggttaattgttcaaatt 8147549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 237 - 417
Target Start/End: Complemental strand, 17445190 - 17445011
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    |||||| ||||||||||||||||||||||  |||||  |||| ||||||  ||||||| | |||||||||||||||||||||||||||||||||| ||||    
T  17445190 cgcccgagctcgatcgataatttttgcac--tagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcac 17445093  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  17445092 acgtaaataggtcttggaattttatttagcacactattgacagtttcatctctcttattttaacgggttaattgttcaaatt 17445011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 237 - 414
Target Start/End: Complemental strand, 32127292 - 32127114
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagac-ctaaccaaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||||||||||||| ||||||||||||||||| || | | ||||||||| ||||||| | |||||||||||||||||| ||||||||||||||| ||||    
T  32127292 cgcccgggctcgatcaataatttttgcacattaaactcgacccaaaagctcattaacacatttacaaaaagaaaaatttaggcaatctgaaaattgtcac 32127193  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaa 414  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||    
T  32127192 acgcaaatagatcttggaattttatttagcacactattgacgggttcatgtctcttattttaacgggttaattgttcaa 32127114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 237 - 417
Target Start/End: Original strand, 16405616 - 16405797
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||||||||| ||||||||||||||||| ||||||  |||| ||||||| ||||||| | ||| |||||||||||||||| ||||||||||||| ||||    
T  16405616 cgcccgggctcaatcgataatttttgcacgttagactcaacccaaaagctcattaacacatttataaaaagaaaaatttggacaatctgaaaattgtcac 16405715  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||    
T  16405716 acgcaaataagtcttggaattttatttagcacactattgacgggttcatgtctcttattttaacgggttaattgttcaaatt 16405797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 237 - 417
Target Start/End: Complemental strand, 31581773 - 31581592
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||| ||||||| ||||| |||||||| |||||||  | || ||||||  ||||||| | |||||||||||||||||||||||||||||||||| ||||    
T  31581773 cgcccaggctcgagcgatactttttgcatattagactcatcccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcac 31581674  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  31581673 acgcaaataggtcttggaattttatttagcacactattgacgggttcatctctcttattttaacgggttaattgttcaaatt 31581592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 240 - 417
Target Start/End: Original strand, 18981635 - 18981813
Alignment:
Q  240 ccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacacg 338  Q
    ||||||||||| |||||||||||||||||||||  |||| |||||   ||||| | | ||||||||||||||||||||||||| | |||||| |||||||    
T  18981635 ccgggctcgattgataatttttgcacattagactcaacccaaaagtccattaaaacatttacaaaaagaaaaatttgggcaatttaaaaattgtcacacg 18981734  T
Q  339 caaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||| ||||||||||||||||||    
T  18981735 caaataggtcttggaattttatttagcacactgttgacgggttcatgtctcttattttaacgggttaattgttcaaatt 18981813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 237 - 417
Target Start/End: Complemental strand, 8059484 - 8059303
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||| ||||| |||||||||||||||||||||||   |||| |||||| |||||||| |||||||||||||||||||||| |||| |||||||||||||    
T  8059484 cgcccaggctcaatcgataatttttgcacattagagtcaacccaaaagccaattaacacacttacaaaaagaaaaatttggccaatttgaaaattctcac 8059385  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    || ||||| ||||| ||||||||||||||||||| |||||| ||||||| |||||||||||||  |||||||||||||||||    
T  8059384 acacaaatcggtctcggaattttatttagcacacaattgacgggttcatttctcttattttaacaggttaattgttcaaatt 8059303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 246 - 418
Target Start/End: Original strand, 2285887 - 2286060
Alignment:
Q  246 tcgatcgataatttttgcacattagacctaaccaaaagcta-attaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaata 344  Q
    |||||||||||||||||||||||| | | ||||||||  |  ||||||| | |||| ||| |||||||||| |||||||||||||| |||||||||||||    
T  2285887 tcgatcgataatttttgcacattaaatccaaccaaaaagtctattaacacatttacgaaaggaaaaatttgagcaatctgaaaattgtcacacgcaaata 2285986  T
Q  345 ggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaattt 418  Q
    ||| ||||||||||||||||||||||||||||  |||||| ||||||||||||| |||||||||||||||||||    
T  2285987 ggttttggaattttatttagcacactattgacgtgttcatttctcttattttaacgggttaattgttcaaattt 2286060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 287 - 417
Target Start/End: Complemental strand, 26162799 - 26162672
Alignment:
Q  287 attaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatct 386  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||| || ||||||||||| |||   |||||||||||| ||||||| |||||||||    
T  26162799 attaacacacttacaaaaagaaaaatttgggcaatctaaaaattctcaaacacaaataggtctcgga---ttatttagcacattattgacgggttcatct 26162703  T
Q  387 ctcttattttaatgggttaattgttcaaatt 417  Q
    ||||||||||||  | |||||||||||||||    
T  26162702 ctcttattttaacagtttaattgttcaaatt 26162672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 240 - 357
Target Start/End: Complemental strand, 2958248 - 2958131
Alignment:
Q  240 ccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacacg 338  Q
    ||||||||||||||||||||| |||||||||||  |||| ||||||  ||||||| | ||||||| ||||||||||||| |||||||||||| |||||||    
T  2958248 ccgggctcgatcgataatttt-gcacattagactcaacccaaaagcccattaacacatttacaaagagaaaaatttgggtaatctgaaaattgtcacacg 2958150  T
Q  339 caaataggtcttggaattt 357  Q
    |||||||||||||||||||    
T  2958149 caaataggtcttggaattt 2958131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 245 - 346
Target Start/End: Complemental strand, 4555354 - 4555250
Alignment:
Q  245 ctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggc--aatctgaaaattctcacacgcaa 341  Q
    ||||||||||||||||||||||| | ||| |||| |||||||  |||||| |||||||||||||||| |||||||  |||||||||||||||||||| ||    
T  4555354 ctcgatcgataatttttgcacatcaaacccaacccaaaagctcgttaacacacttacaaaaagaaaattttgggcaaaatctgaaaattctcacacgtaa 4555255  T
Q  342 atagg 346  Q
    |||||    
T  4555254 atagg 4555250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 237 - 417
Target Start/End: Original strand, 26237973 - 26238140
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagac-ctaaccaaaagctaattaacagacttacaaaaagaaaaatttgggcaa-tctgaaaattctca 334  Q
    ||||||||||||||||||| |||||||| ||||||  | |||||||||   ||||||| |||||||||||||||||||||||||| |||||||| |||||    
T  26237973 cgcccgggctcgatcgata-tttttgcaaattagatgcaaaccaaaagtccattaacacacttacaaaaagaaaaatttgggcaaatctgaaaactctca 26238071  T
Q  335 cacgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
     ||| | ||              ||||||||||||||||||| ||||||||||||||||||||| | |||| |||||||||||    
T  26238072 gacgtatat--------------tatttagcacactattgacgggttcatctctcttattttaacgagttatttgttcaaatt 26238140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 353 - 417
Target Start/End: Complemental strand, 4555226 - 4555162
Alignment:
Q  353 aattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||||||||||| ||||||||||||  |||||||||||||||||||| | ||||||||||||||||    
T  4555226 aattttatttaccacactattgacgagttcatctctcttattttaacgagttaattgttcaaatt 4555162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 353 - 417
Target Start/End: Complemental strand, 7072564 - 7072501
Alignment:
Q  353 aattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    |||||||||||| |||| |||||| |||||||||||||||||||||  |||||||||||||||||    
T  7072564 aattttatttagtacac-attgacgggttcatctctcttattttaactggttaattgttcaaatt 7072501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 353 - 417
Target Start/End: Original strand, 45121368 - 45121432
Alignment:
Q  353 aattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    |||||||||||| ||||||||| ||||||||| ||||||||||||| || |||||| ||||||||    
T  45121368 aattttatttagaacactattggcaggttcatgtctcttattttaaaggattaattattcaaatt 45121432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 231 - 299
Target Start/End: Original strand, 34905959 - 34906028
Alignment:
Q  231 tttcaccgcccgggctcgatcgataatttttgcacattagacctaa-ccaaaagctaattaacagactta 299  Q
    ||||||||  |||||||||||||||||||||||||||||  ||||| ||||||||  ||||||| |||||    
T  34905959 tttcaccgttcgggctcgatcgataatttttgcacattaagcctaacccaaaagcccattaacacactta 34906028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 346
Target Start/End: Complemental strand, 7072703 - 7072589
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagac-ctaaccaaaagctaatta--acagacttacaaaaagaaaaatttgggcaa--tctgaaaattc 331  Q
    |||||||||||||||||||||||||  |||||| || | | ||||||||  ||||  ||| ||||| ||||||||||  |||| |||  |||||||||||    
T  7072703 cgcccgggctcgatcgataatttttttacattaaactcaacccaaaagcccattaacacacacttataaaaagaaaatattggacaaattctgaaaattc 7072604  T
Q  332 tcacacgcaaatagg 346  Q
    || |||| |||||||    
T  7072603 tcgcacgtaaatagg 7072589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 381
Target Start/End: Original strand, 31392932 - 31392960
Alignment:
Q  353 aattttatttagcacactattgacaggtt 381  Q
    |||||||||||||||||||||||||||||    
T  31392932 aattttatttagcacactattgacaggtt 31392960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 237 - 417
Target Start/End: Original strand, 5246 - 5427
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||||||||||||| ||||||||||||||||||||| || | |||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  5246 cgcccgggctcgatcaataatttttgcacattagacccaatctaaaagccaattaacacacttacaaaaagaaaattttgggcaatctgaaaattctcac 5345  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    | |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  5346 atgcaaataggtctcggaattttatttagcacactattgacgggttcatctctcttattttaacgggttaattgttcaaatt 5427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 229 - 417
Target Start/End: Original strand, 52933 - 53122
Alignment:
Q  229 ggtttcaccgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaa 327  Q
    |||||||||| ||||||||||||||||||||||||||||||||  ||||| |||||| |||||||| | |||||||||||||||||||| ||||||||||    
T  52933 ggtttcaccgtccgggctcgatcgataatttttgcacattagatttaacccaaaagccaattaacacatttacaaaaagaaaaatttggacaatctgaaa 53032  T
Q  328 attctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||    
T  53033 attctcacatgcaaataggtctcggaattttatttagcacactattgacgggttcatctctcttattttaacggattaattgttcaaatt 53122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 237 - 417
Target Start/End: Original strand, 4404024 - 4404205
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||||||||||||||||||||||||||||||||||  |||| |||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  4404024 cgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacatacttacaaaaagaaaaatttgggcaatctaaaaattctcac 4404123  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    |||||||||||||| ||||||||||||||||||| |||||  ||||||||||||||||||||| ||||||||||||||||||    
T  4404124 acgcaaataggtctcggaattttatttagcacacaattgatgggttcatctctcttattttaacgggttaattgttcaaatt 4404205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 237 - 417
Target Start/End: Complemental strand, 16788176 - 16787995
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||||||||||||||||||||||||||||||||||  |||| |||||| |||||||| ||||||||||||||||||||||||||||| |||| ||||||    
T  16788176 cgcccgggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatcttaaaactctcac 16788077  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||| |||||    
T  16788076 acgcaaataggtcttggaattttatttagcacactattgacgggttcatctctcttatttgaacgggttaattgtttaaatt 16787995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 237 - 417
Target Start/End: Original strand, 23402124 - 23402305
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||||||||||||||||||| |||||| |||||||| |||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  23402124 cgcccgggctcgatcgataatctttgcatattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcac 23402223  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    |||||||||||||| | ||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  23402224 acgcaaataggtctcgaaattttatttaacacactattgactggttcatctctcttattttaacgggttaattgttcaaatt 23402305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 237 - 417
Target Start/End: Complemental strand, 34136976 - 34136795
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||||||||||||||||||||||||||||||||||  |||| |||||  |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  34136976 cgcccgggctcgatcgataatttttgcacattagactcaacccaaaagtcaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcac 34136877  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    |||||||||||||| | ||||||||||||||||| |||||  ||||||||||||||||||||| ||||||||||||||||||    
T  34136876 acgcaaataggtctcgaaattttatttagcacacaattgatgggttcatctctcttattttaacgggttaattgttcaaatt 34136795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 243 - 417
Target Start/End: Original strand, 9877242 - 9877417
Alignment:
Q  243 ggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaa 341  Q
    |||||||| ||||||||||||||||||||||||||| |||||  |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  9877242 ggctcgattgataatttttgcacattagacctaacccaaaagtcaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcacatgcaa 9877341  T
Q  342 ataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    |||||||| | |||||||||||||||||||||| ||  ||||||||||||||||||| ||||||||||||||||||    
T  9877342 ataggtctcgaaattttatttagcacactattgtcaaattcatctctcttattttaacgggttaattgttcaaatt 9877417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 237 - 417
Target Start/End: Complemental strand, 29728537 - 29728356
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    |||||| ||||||||||||| |||||||||||||||  |||| ||||||| ||||||| | |||||||||||||||||||||||||||||||||| | ||    
T  29728537 cgcccgtgctcgatcgataaattttgcacattagactcaacccaaaagctcattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtgac 29728438  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||    
T  29728437 acgcaaataggtcttcgaattttatttagcacactattgacgggttcatctctcttattttaacgggttaattgctcaaatt 29728356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 237 - 417
Target Start/End: Complemental strand, 3648945 - 3648764
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||||||||||||||||||||||| ||||||||||  |||| ||||||  ||||||| | |||||||||||||| ||||||||||||||||||| ||||    
T  3648945 cgcccgggctcgatcgataattttttcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaattttgggcaatctgaaaattgtcac 3648846  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    |||||| ||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||    
T  3648845 acgcaagtaggttttggaattttatttagcacactattgacgggttcatctctattattttaacgggttaattgttcaaatt 3648764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 237 - 417
Target Start/End: Original strand, 39914531 - 39914711
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaaccaaaa-gctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||||||||||||||||||||||||||||||||||  |||||||| ||| ||||||| | ||| ||||| ||||||||||||||| |||||||| ||||    
T  39914531 cgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttataaaaa-aaaaatttgggcaatttgaaaattgtcac 39914629  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    | | ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| | ||||||||||||||||    
T  39914630 aagtaaataggtcttggaattttatttggcacactattgacagtttcatctctcttattttaacgagttaattgttcaaatt 39914711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 239 - 418
Target Start/End: Original strand, 15838304 - 15838483
Alignment:
Q  239 cccgggctcgatcgataatttttgcacattagacctaaccaaaagcta-attaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacac 337  Q
    |||||||||||| |||||||||||||||||| ||  ||||||||  |  ||||||| | |||||||| ||||||||||||||||||||||||| ||||||    
T  15838304 cccgggctcgattgataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaaaa-gaaaaatttgggcaatctgaaaattttcacac 15838402  T
Q  338 gcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaattt 418  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||| |||||||||||| ||||||    
T  15838403 gcaaataggtcttggaattttatttagcacactattgacgggttcatatatcttattttaacgggttaattgtttaaattt 15838483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 237 - 417
Target Start/End: Original strand, 36408567 - 36408748
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||||||||||||||||||||||||||||||||| | |||| |||||   ||||||| | |||||||||||||| ||| |||||| |||||||||| ||    
T  36408567 cgcccgggctcgatcgataatttttgcacattagatccaacccaaaagtccattaacacatttacaaaaagaaaatttttggcaatttgaaaattcttac 36408666  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    |||| |||||||||  |||||||||||| |||||||||| | | |||||||||||||||||||  |||||||||||||||||    
T  36408667 acgctaataggtctcagaattttatttaacacactattgccggattcatctctcttattttaacaggttaattgttcaaatt 36408748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 295 - 417
Target Start/End: Original strand, 42231012 - 42231134
Alignment:
Q  295 acttacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttatt 394  Q
    ||||||||||||||||||||||||||| |||||||||||| | ||||||||||||  ||||||||||||||||||||||||| | ||||||||| |||||    
T  42231012 acttacaaaaagaaaaatttgggcaatttgaaaattctcatatgcaaataggtctcagaattttatttagcacactattgacggattcatctcttttatt 42231111  T
Q  395 ttaatgggttaattgttcaaatt 417  Q
    |||| || |||||||||||||||    
T  42231112 ttaacggattaattgttcaaatt 42231134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 220 - 346
Target Start/End: Original strand, 3435268 - 3435397
Alignment:
Q  220 gccaggggtggtttcaccgcccgggctcgatcgataatttttgcacattagacctaa-ccaaaagctaattaacagacttacaaaaagaaaaatttgggc 318  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||||||||| || |||||| |  ||||||| ||||||||||||||||||||||||    
T  3435268 gccaggggcggtttcaccgcccgggcttgatcgataatttttgcacattagacccaacccaaaaacccattaacacacttacaaaaagaaaaatttgggc 3435367  T
Q  319 --aatctgaaaattctcacacgcaaatagg 346  Q
      |||||||||||||||| |||||||||||    
T  3435368 aaaatctgaaaattctcaaacgcaaatagg 3435397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 237 - 409
Target Start/End: Complemental strand, 2729347 - 2729174
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaa-ccaaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||||||||||||||||||||||| ||||||| | | || ||||||||  ||||||| ||||| |||||||||  ||| |||||| |||||| |||||     
T  2729347 cgcccgggctcgatcgataatttttacacattaaatccaatccaaaagcccattaacacacttataaaaagaaattttttggcaatttgaaaactctcat 2729248  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattg 409  Q
    ||||||||||||||   |||||||||||||||||||||||  | ||||||||||||||||||| | ||||||||    
T  2729247 acgcaaataggtctcaaaattttatttagcacactattgatggattcatctctcttattttaacgagttaattg 2729174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 353 - 417
Target Start/End: Complemental strand, 40470509 - 40470445
Alignment:
Q  353 aattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||    
T  40470509 aattttatttagcacactattgacgggttcatctctcttattttaacgggataattgttcaaatt 40470445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 346
Target Start/End: Complemental strand, 40470659 - 40470533
Alignment:
Q  222 caggggtggtttcaccgcccgggctcgatcgataatttttgcacattaga-cctaaccaaaagctaattaacagacttacaaaaagaaaaatttgggc-- 318  Q
    |||||| ||||| ||||| || |||||||||||||||||||||||||||| || || ||||||   ||||||| ||||| ||||| ||||| ||||||      
T  40470659 caggggcggttttaccgctcgagctcgatcgataatttttgcacattagacccaaatcaaaagtccattaacacacttataaaaa-aaaaaattgggcaa 40470561  T
Q  319 aatctgaaaattctcacacgcaaatagg 346  Q
    ||||| |||| || |||||| |||||||    
T  40470560 aatctaaaaactcgcacacgtaaatagg 40470533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 353 - 417
Target Start/End: Original strand, 378604 - 378668
Alignment:
Q  353 aattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    |||||||||||||||| ||||  ||||||||| | ||||||||| |  |||||||||||||||||    
T  378604 aattttatttagcacattattagcaggttcatttatcttattttgaacggttaattgttcaaatt 378668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 237 - 417
Target Start/End: Original strand, 31496 - 31677
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    |||||||||||||||||||||||||||||| |||||| |||| ||||||  ||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  31496 cgcccgggctcgatcgataatttttgcacactagacccaacccaaaagcccattaacacacttacaaaaagaaaaatttggacaatctgaaaattctcac 31595  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
     ||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  31596 tcgcaaataggtctagtaattttattttgcacactattgacaggttcatctctcttattttaacgggttaattgttcaaatt 31677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2142 (Bit Score: 126; Significance: 8e-65; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 237 - 417
Target Start/End: Original strand, 538 - 719
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaaccaaaa-gctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||||||||||||||||||||||||||||||||||  |||||||| ||| ||||||| | ||| ||||||||||||||||||||| |||||||| ||||    
T  538 cgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttataaaaagaaaaatttgggcaatttgaaaattgtcac 637  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  638 acgtaaataggtcttggaattttatttggcacactattgacagtttcatctctcttattttaacgggttaattgttcaaatt 719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 126; Significance: 8e-65; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 237 - 417
Target Start/End: Complemental strand, 480608 - 480427
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaaccaaaa-gctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||||||||||||||||||||||||||||||||||  |||||||| ||| ||||||| | ||| ||||||||||||||||||||| |||||||| ||||    
T  480608 cgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttataaaaagaaaaatttgggcaatttgaaaattgtcac 480509  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  480508 acgtaaataggtcttggaattttatttggcacactattgacagtttcatctctcttattttaacgggttaattgttcaaatt 480427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 126; Significance: 8e-65; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 237 - 417
Target Start/End: Original strand, 26144271 - 26144452
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaaccaaaa-gctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||||||||||||||||||||||||||||||||||  |||||||| ||| ||||||| | ||| ||||||||||||||||||||| |||||||| ||||    
T  26144271 cgcccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttataaaaagaaaaatttgggcaatttgaaaattgtcac 26144370  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  26144371 acgtaaataggtcttggaattttatttggcacactattgacagtttcatctctcttattttaacgggttaattgttcaaatt 26144452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 241 - 417
Target Start/End: Original strand, 3829004 - 3829180
Alignment:
Q  241 cgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacacgc 339  Q
    |||| |||||||||||||||||||||||| ||| |||| ||||| | ||||||| |||||||||||||||||||||||||||||||||||| ||| ||||    
T  3829004 cgggttcgatcgataatttttgcacattaaacccaacccaaaagttcattaacacacttacaaaaagaaaaatttgggcaatctgaaaattttcatacgc 3829103  T
Q  340 aaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  3829104 aaataggtct-ggaattttatttagcacactattgacgggttcatctctcttattttaacgggttaattgttcaaatt 3829180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 237 - 417
Target Start/End: Original strand, 17445329 - 17445510
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    |||||||||| |||| |||||||||| |||||||| | |||| |||||  |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  17445329 cgcccgggctggatcaataatttttgtacattagatccaacccaaaagtcaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcac 17445428  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    |||||||||||||| |||||||||||||||||| ||||||| ||||||||| ||||||||||| ||||||||||||||||||    
T  17445429 acgcaaataggtctcggaattttatttagcacattattgacgggttcatctttcttattttaacgggttaattgttcaaatt 17445510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 241 - 417
Target Start/End: Complemental strand, 32982203 - 32982026
Alignment:
Q  241 cgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacacgc 339  Q
    ||||| ||||||||||||||||||||||||||| |||| ||||||  ||||||| | |||||||||||||||||||| ||||||||||||| |||||| |    
T  32982203 cgggcccgatcgataatttttgcacattagacccaacctaaaagcccattaacatatttacaaaaagaaaaatttggacaatctgaaaattgtcacacac 32982104  T
Q  340 aaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  32982103 aaataggtcttggaattttatttagcactctattgacagattcatctctcttattttaaagggttaattgttcaaatt 32982026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 237 - 417
Target Start/End: Original strand, 35907568 - 35907749
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    |||||||||| |||||||||||||||||||||||||| |||| |||||| |||||  | |||||||||||||||| |||||| |||||||||||||||||    
T  35907568 cgcccgggcttgatcgataatttttgcacattagacccaacccaaaagccaattagtacacttacaaaaagaaaattttgggtaatctgaaaattctcac 35907667  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    |||||||||||||| |||||||||||||||||| |||||||  |||||||||||||||||||| ||||||| ||||||||||    
T  35907668 acgcaaataggtctcggaattttatttagcacattattgacgagttcatctctcttattttaacgggttaactgttcaaatt 35907749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 237 - 417
Target Start/End: Complemental strand, 42311092 - 42310911
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    ||||||||||||||||||||||||||||||||||||  |||| ||||||   |||||| | |||||||||||||||||||||||||||||||||| ||||    
T  42311092 cgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccgttaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcac 42310993  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||||||||| |||||| |||||||||||| || |||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  42310992 acgcaaataagtcttgaaattttatttagtacgctattgacgggttcatctctcttattttaacgggttaattgttcaaatt 42310911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 237 - 417
Target Start/End: Original strand, 7433461 - 7433642
Alignment:
Q  237 cgcccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcac 335  Q
    |||||| |||||||| ||||||||||||||||||||  |||| ||||||  ||||||| | |||||||||||||| |||||||||||| |||||| ||||    
T  7433461 cgcccgagctcgatctataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaattttgggcaatctaaaaattgtcac 7433560  T
Q  336 acgcaaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    || ||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||    
T  7433561 acacaaataggtcttgaaattttatttagcacactattgacgggttcatgtctcttattttaacgggttaattgttcaaatt 7433642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 240 - 417
Target Start/End: Complemental strand, 321525 - 321347
Alignment:
Q  240 ccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacacg 338  Q
    |||||||||||||||||||||||  ||||||| | |||| |||||   ||||||| | |||||||||||||||||||||||||||||||||||||| | |    
T  321525 ccgggctcgatcgataatttttgtgcattagatccaacccaaaagtccattaacacagttacaaaaagaaaaatttgggcaatctgaaaattctcatatg 321426  T
Q  339 caaataggtcttggaattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||||||||||| ||||||||||||| |||| ||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  321425 caaataggtctcggaattttatttaacacattattgacgggttcatctctcttattttaacgggttaattgttcaaatt 321347  T

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Target: chr1; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 243 - 417
Target Start/End: Complemental strand, 41972420 - 41972226
Alignment:
Q  243 ggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgg--gcaatctgaaaattctcacacgc 339  Q
    ||||||||||||||||||||||||||||| | |||| ||||||  ||||||| ||||||||||||||||||||||    |||||||||||||||||||||    
T  41972420 ggctcgatcgataatttttgcacattagatccaacctaaaagcctattaacacacttacaaaaagaaaaatttggaaaaaatctgaaaattctcacacgc 41972321  T
Q  340 aaataggtcttgg------------------aattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||||||| |||||                  |||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||    
T  41972320 aaatagg-cttggaaaagacatttacctcctaattttatttagcacactattgacgggttcatctctcttattttaacggattaattgttcaaatt 41972226  T

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Target: chr1; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 250 - 417
Target Start/End: Original strand, 33489716 - 33489903
Alignment:
Q  250 tcgataatttttgcacattagac-ctaaccaaaagctaattaacagacttacaaaaagaaaaatttgggcaa--tctgaaaattctcacacgcaaatagg 346  Q
    ||||||||||||| ||||||||| | ||| ||||||  ||||||| |||||| |||||||||||||| ||||  ||||||||||||||||||||||||||    
T  33489716 tcgataatttttgtacattagactcaaactaaaagcccattaacacacttactaaaagaaaaatttgagcaaaatctgaaaattctcacacgcaaatagg 33489815  T
Q  347 tcttggaa------------------ttttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
     |||||||                  |||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||    
T  33489816 -cttggaaaagacatttacctcctaattttatttagcacactattgacgggttcatctctcttattttaacgggctaattgttcaaatt 33489903  T

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Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 353 - 417
Target Start/End: Original strand, 28463231 - 28463295
Alignment:
Q  353 aattttatttagcacactattgacaggttcatctctcttattttaatgggttaattgttcaaatt 417  Q
    ||||||||||||||||||||||   ||||||||||||||||||| |  |||||||||||||||||    
T  28463231 aattttatttagcacactattggtgggttcatctctcttattttgaatggttaattgttcaaatt 28463295  T

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Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 238 - 326
Target Start/End: Original strand, 23313255 - 23313345
Alignment:
Q  238 gcccgggctcgatcgataattt-ttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaa 326  Q
    ||||||||||||| ||| |||| |||||||||||||  |||  ||||| | ||||||| | ||||||||||||||||||||||||||||||    
T  23313255 gcccgggctcgattgatgatttgttgcacattagactcaacataaaagttcattaacacatttacaaaaagaaaaatttgggcaatctgaa 23313345  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 381
Target Start/End: Original strand, 25017522 - 25017550
Alignment:
Q  353 aattttatttagcacactattgacaggtt 381  Q
    |||||||||||||||||||||||||||||    
T  25017522 aattttatttagcacactattgacaggtt 25017550  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 381
Target Start/End: Complemental strand, 32379895 - 32379867
Alignment:
Q  353 aattttatttagcacactattgacaggtt 381  Q
    |||||||||||||||||||||||||||||    
T  32379895 aattttatttagcacactattgacaggtt 32379867  T

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Target: scaffold0069 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 240 - 393
Target Start/End: Original strand, 17861 - 18015
Alignment:
Q  240 ccgggctcgatcgataatttttgcacattagacctaacc-aaaagctaattaacagacttacaaaaagaaaaatttgggcaatctgaaaattctcacacg 338  Q
    |||||||||||||||||||||||||||||||||  |||| ||||||  ||||||| | |||||||||||||||||||||||||||||||||| ||||| |    
T  17861 ccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcacatg 17960  T
Q  339 caaataggtcttggaattttatttagcacactattgacaggttcatctctcttat 393  Q
     |||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  17961 taaataggtcttgaaattttatttagcacactattgacagtttcatctctcttat 18015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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