View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6873A_low_110 (Length: 249)
Name: NF6873A_low_110
Description: NF6873A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6873A_low_110 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 1045610 - 1045813
Alignment:
| Q |
1 |
atcttttcttcactgtttgaacctgttcgattaacaagtataataaataactcattgtaatctcgttttgtgctcctaattttttcaatttatcttgtta |
100 |
Q |
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| T |
1045610 |
atcttttcttcactgtttgaatctattcgattaacaagtataataaataactcattgt-------------gctcctaattttttcaatttatcttgtta |
1045696 |
T |
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| Q |
101 |
tttgttatttttggcaaacattctgtgtgtgtgactgaaatttttgttaaaatttaaagaaactggaaaagtagtttgtttaaggagttgatatgacttg |
200 |
Q |
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| T |
1045697 |
tctgttatttttggcaaacattctgtg--tgtgactgaaatttttgttaaaatttaaagaaaatggaaaagtagtttgtttaaggagttgatatgacttg |
1045794 |
T |
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| Q |
201 |
aattgtggctataacttat |
219 |
Q |
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||||||||||||||||||| |
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| T |
1045795 |
aattgtggctataacttat |
1045813 |
T |
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