View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6873A_low_112 (Length: 248)

Name: NF6873A_low_112
Description: NF6873A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6873A_low_112
NF6873A_low_112
[»] chr3 (27 HSPs)
chr3 (5-229)||(41985625-41985852)
chr3 (5-227)||(41980851-41981073)
chr3 (8-110)||(9494822-9494924)
chr3 (8-229)||(9448314-9448535)
chr3 (8-124)||(9343845-9343961)
chr3 (16-124)||(9329844-9329952)
chr3 (16-124)||(9336548-9336656)
chr3 (8-124)||(9407366-9407482)
chr3 (8-121)||(9655360-9655473)
chr3 (8-121)||(9425573-9425686)
chr3 (8-121)||(9646367-9646480)
chr3 (8-124)||(9617463-9617579)
chr3 (16-124)||(9695616-9695724)
chr3 (16-109)||(9340679-9340772)
chr3 (22-124)||(9416587-9416689)
chr3 (8-124)||(9397785-9397903)
chr3 (20-110)||(9352913-9353003)
chr3 (16-109)||(9347995-9348088)
chr3 (16-109)||(9369649-9369742)
chr3 (9-130)||(9756381-9756502)
chr3 (8-124)||(9432896-9433012)
chr3 (8-116)||(9626488-9626596)
chr3 (22-90)||(9441815-9441883)
chr3 (16-68)||(9614009-9614061)
chr3 (76-124)||(9686751-9686799)
chr3 (12-71)||(9377090-9377149)
chr3 (9-38)||(16011768-16011797)
[»] chr8 (2 HSPs)
chr8 (64-229)||(13170579-13170744)
chr8 (6-229)||(44688680-44688903)
[»] chr1 (8 HSPs)
chr1 (5-229)||(18991201-18991422)
chr1 (8-106)||(235213-235311)
chr1 (8-75)||(4439860-4439927)
chr1 (5-119)||(4428628-4428742)
chr1 (8-101)||(8814385-8814478)
chr1 (8-106)||(251412-251510)
chr1 (16-101)||(231589-231674)
chr1 (8-99)||(246867-246958)
[»] chr2 (1 HSPs)
chr2 (8-121)||(20694304-20694417)
[»] chr6 (7 HSPs)
chr6 (8-124)||(7041496-7041612)
chr6 (8-106)||(7046839-7046937)
chr6 (45-106)||(7025793-7025854)
chr6 (45-106)||(7029850-7029911)
chr6 (45-106)||(9170854-9170915)
chr6 (45-104)||(9159515-9159574)
chr6 (45-106)||(7012857-7012918)
[»] chr7 (2 HSPs)
chr7 (5-111)||(3695687-3695792)
chr7 (16-124)||(450111-450219)
[»] chr5 (1 HSPs)
chr5 (8-110)||(18571108-18571213)


Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 5 - 229
Target Start/End: Original strand, 41985625 - 41985852
Alignment:
Q  5 cagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctc 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41985625 cagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctc 41985724  T
Q  105 atcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctactagcaacaac---tcacgctcactc 201  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||   |||| |||||||    
T  41985725 atcaagtctgaacacatcaagctttaaaccatcttcaccggggaaaccaaaacaatgagagtcatatatgtctactagcaacaactgatcaccctcactc 41985824  T
Q  202 tctaccaggaatttcatgtcccctccat 229  Q
    ||||||||||||||||||||||||||||    
T  41985825 tctaccaggaatttcatgtcccctccat 41985852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 5 - 227
Target Start/End: Original strand, 41980851 - 41981073
Alignment:
Q  5 cagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctc 104  Q
    |||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||     
T  41980851 cagacaaatttgaagcagaagcaaaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgtcaacttgacccatttcttctctttctt 41980950  T
Q  105 atcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctactagcaacaactcacgctcactctct 204  Q
    | |||| || ||||||||||| || |||||||||||||||||||| |||| ||||||||||| ||| ||||| |||||||| || |||| ||||||||||    
T  41980951 agcaagcctaaacacatcaagattgaaaccatcttcaccagggaacccaacacaatgagagtgataaatgtccactagcaataattcaccctcactctct 41981050  T
Q  205 accaggaatttcatgtcccctcc 227  Q
    |||||||||||||  ||||||||    
T  41981051 accaggaatttcacatcccctcc 41981073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 9494924 - 9494822
Alignment:
Q  8 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 107  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||| || |||||| || |||||||||||||    
T  9494924 acaaatcagaagcagaagcagaaaacgaacatccattccccaagaacaaaaccctatcccctaaactcatcaaattcacccatctcatctccttctcatc 9494825  T
Q  108 aag 110  Q
    |||    
T  9494824 aag 9494822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 229
Target Start/End: Original strand, 9448314 - 9448535
Alignment:
Q  8 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 107  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||| | |  ||||| ||||||||||||||||||||||     
T  9448314 acaaatccgaagcagaagcagaaaacgaacagtcattccccaagaacaaaacactatcccctaaagttgttaacttcacccatttcttctccttctcata 9448413  T
Q  108 aagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctactagcaacaactcacgctcactctctacc 207  Q
    |||  | |||||||||| | ||| | ||||   ||| |||||  | ||||||  | | ||||| ||||| ||||||||||| || | ||| || || ||     
T  9448414 aagcttaaacacatcaacccttatagcatcaggacccgggaactcgaaacaaaaacactcataaatgtccactagcaacaagtctccctctctatcaact 9448513  T
Q  208 aggaatttcatgtcccctccat 229  Q
    | |||||| |||||||||||||    
T  9448514 aagaattttatgtcccctccat 9448535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 9343845 - 9343961
Alignment:
Q  8 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 107  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| | |  ||||| ||||| ||||||||| |||||||    
T  9343845 acaaatccgaagcagaagcagaaaacgaacattcattccccaagaacaaaacactatcccctaaagttgttaacttcacccacttcttctccatctcatc 9343944  T
Q  108 aagtctgaacacatcaa 124  Q
    |||  | ||||||||||    
T  9343945 aagcttaaacacatcaa 9343961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 9329844 - 9329952
Alignment:
Q  16 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctga 115  Q
    ||||||||||||||||||||| ||||||||||||||||||||||  |||| |||||| ||||||||||||||||  | ||||| ||||||||||| || |    
T  9329844 gaagcagaagcagaaaacgaatatccattccccaagaacaaaaccttatctcctaaattcgccaacttgacccaccttttctctttctcatcaagcctaa 9329943  T
Q  116 acacatcaa 124  Q
    |||||||||    
T  9329944 acacatcaa 9329952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 9336548 - 9336656
Alignment:
Q  16 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctga 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||| |||||| ||| || |||||||||  | ||||| ||||||||||| || |    
T  9336548 gaagcagaagcagaaaacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaa 9336647  T
Q  116 acacatcaa 124  Q
    |||||||||    
T  9336648 acacatcaa 9336656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 9407366 - 9407482
Alignment:
Q  8 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 107  Q
    ||||||||||||| ||||||||||| |||||||||||| | ||||||||||| |||||||||||||||  |||||| |||||| | || | |||||| ||    
T  9407366 acaaatccgaagctgaagcagaaaatgaacatccattcacaaagaacaaaaccctatcccctaaactcatcaacttcacccatcttttattcttctcgtc 9407465  T
Q  108 aagtctgaacacatcaa 124  Q
    |||||| ||||||||||    
T  9407466 aagtctaaacacatcaa 9407482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 121
Target Start/End: Complemental strand, 9655473 - 9655360
Alignment:
Q  8 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 107  Q
    ||||||||||||| || ||||||||||||||||| |  ||||| |||||||| |||||||||||| ||  |||||| ||||||||||||||||||||||     
T  9655473 acaaatccgaagctgatgcagaaaacgaacatccttcgcccaaaaacaaaaccctatcccctaaattcatcaacttcacccatttcttctccttctcatg 9655374  T
Q  108 aagtctgaacacat 121  Q
    || |||||| ||||    
T  9655373 aaatctgaaaacat 9655360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 121
Target Start/End: Original strand, 9425573 - 9425686
Alignment:
Q  8 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 107  Q
    ||||||||||||| ||||||||||| |||||||||||| | ||||||||||| |||| || |||||||  |||||| |||||||| || | |||||| ||    
T  9425573 acaaatccgaagctgaagcagaaaatgaacatccattcacaaagaacaaaaccctattccttaaactcatcaacttcacccattttttattcttctcgtc 9425672  T
Q  108 aagtctgaacacat 121  Q
    |||||| |||||||    
T  9425673 aagtctaaacacat 9425686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 121
Target Start/End: Complemental strand, 9646480 - 9646367
Alignment:
Q  8 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 107  Q
    ||||||||||||| || ||||||||||||||||| |  || || |||||||| |||||||||||| ||  |||||| ||||||||||||||||||||||     
T  9646480 acaaatccgaagctgatgcagaaaacgaacatccttcgccaaaaaacaaaaccctatcccctaaattcatcaacttcacccatttcttctccttctcatg 9646381  T
Q  108 aagtctgaacacat 121  Q
    || |||||| ||||    
T  9646380 aaatctgaaaacat 9646367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 9617579 - 9617463
Alignment:
Q  8 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 107  Q
    ||||||| ||||||||||||||||| |||||||||||| | | ||||||||| |||||||||||| |   |||||| |||||||||||||| |||||||     
T  9617579 acaaatctgaagcagaagcagaaaatgaacatccattcacaaggaacaaaaccctatcccctaaatttttcaacttcacccatttcttctctttctcatg 9617480  T
Q  108 aagtctgaacacatcaa 124  Q
    ||  |||||||| ||||    
T  9617479 aaacctgaacacttcaa 9617463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 124
Target Start/End: Complemental strand, 9695724 - 9695616
Alignment:
Q  16 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctga 115  Q
    |||||||| ||||| ||||||||  | | |||||| |||||||| |||||||||||| | | |||||||||||| |||||||||||||||||||| ||||    
T  9695724 gaagcagatgcagagaacgaacagtcttcccccaaaaacaaaaccctatcccctaaattggtcaacttgacccacttcttctccttctcatcaagcctga 9695625  T
Q  116 acacatcaa 124  Q
    | |||||||    
T  9695624 atacatcaa 9695616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 9340679 - 9340772
Alignment:
Q  16 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaa 109  Q
    |||||||||||||||||||||||||||  ||| | ||| ||||| |||||||| ||| ||  |||||| ||||| |||||||||||||||||||    
T  9340679 gaagcagaagcagaaaacgaacatccacgcccaatgaaaaaaaccctatccccgaaattcctcaacttcacccacttcttctccttctcatcaa 9340772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 124
Target Start/End: Original strand, 9416587 - 9416689
Alignment:
Q  22 gaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacat 121  Q
    ||||||||||| ||||||  |||| | |||||||| || |||||||||||||||| |||||| |||||||| || | |||||| ||||| | ||||||||    
T  9416587 gaagcagaaaatgaacatttattcacgaagaacaacaccctatcccctaaactcgtcaacttcacccattttttattcttctcgtcaagacagaacacat 9416686  T
Q  122 caa 124  Q
    |||    
T  9416687 caa 9416689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 9397785 - 9397903
Alignment:
Q  8 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgaccca--tttcttctccttctca 105  Q
    |||||||| |||| ||||| ||||| |||||||||||| | |||||||| || |||||||||||||||  |||||| || ||  ||| || | ||||||     
T  9397785 acaaatccaaagctgaagcggaaaatgaacatccattcacaaagaacaagaccctatcccctaaactcatcaacttcacgcattttttttatacttctcg 9397884  T
Q  106 tcaagtctgaacacatcaa 124  Q
    |||||||| ||||||||||    
T  9397885 tcaagtctaaacacatcaa 9397903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 9352913 - 9353003
Alignment:
Q  20 cagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaag 110  Q
    ||||||||||||||||||||||| ||||||  |||||||| ||| |||||||  |   |||||| ||||| ||||||||| ||||||||||    
T  9352913 cagaagcagaaaacgaacatccactccccacaaacaaaaccctaccccctaattttttcaacttcacccacttcttctccatctcatcaag 9353003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 9347995 - 9348088
Alignment:
Q  16 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaa 109  Q
    |||||||||||||||||||||||||||  ||| | ||| ||||  |||||||| |||  |  |||||| ||||| |||||||||||||||||||    
T  9347995 gaagcagaagcagaaaacgaacatccacgcccaatgaaaaaaatcctatccccaaaatgcctcaacttcacccacttcttctccttctcatcaa 9348088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 9369649 - 9369742
Alignment:
Q  16 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaa 109  Q
    |||||||||||||||||||||||||||  ||| | ||| ||||  |||||||| |||  |  |||||| ||||| |||||||||||||||||||    
T  9369649 gaagcagaagcagaaaacgaacatccacgcccaatgaaaaaaatcctatccccaaaatgcctcaacttcacccacttcttctccttctcatcaa 9369742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 9756381 - 9756502
Alignment:
Q  9 caaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatca 108  Q
    ||||||||| ||||| ||||| || ||||| || | ||| || |||||||| |||||||| ||| || |||||||||||||  | ||||| |||||||||    
T  9756381 caaatccgatgcagatgcagagaatgaacagccttccccgaaaaacaaaaccctatcccccaaattcaccaacttgacccaccttttctctttctcatca 9756480  T
Q  109 agtctgaacacatcaagcttta 130  Q
    || ||  ||||||||| |||||    
T  9756481 agcctatacacatcaatcttta 9756502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 9432896 - 9433012
Alignment:
Q  8 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 107  Q
    |||||||||| || ||||||||||| ||| || ||  ||| | ||||||||| ||||| |||||| ||   | ||| ||||| ||| |||||||||||||    
T  9432896 acaaatccgaggctgaagcagaaaaggaatattcaagccctatgaacaaaaccctatctcctaaattcttgatcttcacccacttcctctccttctcatc 9432995  T
Q  108 aagtctgaacacatcaa 124  Q
    ||||||||| |||||||    
T  9432996 aagtctgaaaacatcaa 9433012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 9626596 - 9626488
Alignment:
Q  8 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 107  Q
    ||||||||||||| || |||||||| ||   ||| || || || |||||||| |||||||||||| ||  ||| || ||||||||||||||||||||||     
T  9626596 acaaatccgaagctgatgcagaaaatgatgttcctttgccaaaaaacaaaaccctatcccctaaattcatcaaattcacccatttcttctccttctcatg 9626497  T
Q  108 aagtctgaa 116  Q
    || ||||||    
T  9626496 aaatctgaa 9626488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 9441883 - 9441815
Alignment:
Q  22 gaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccat 90  Q
    ||||||||||| ||||||  |||| | ||||||||||| |||||||||||||||  |||||| ||||||    
T  9441883 gaagcagaaaatgaacatttattcacaaagaacaaaaccctatcccctaaactcatcaacttcacccat 9441815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 9614061 - 9614009
Alignment:
Q  16 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccc 68  Q
    ||||||||||||||||| ||||||||| |||||||||| |||||  |||||||    
T  9614061 gaagcagaagcagaaaatgaacatccactccccaagaaaaaaaccatatcccc 9614009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 9686751 - 9686799
Alignment:
Q  76 gccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 124  Q
    |||||||||||||| |||||||| ||||||||||| ||||| |||||||    
T  9686751 gccaacttgacccacttcttctcgttctcatcaagcctgaatacatcaa 9686799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 9377090 - 9377149
Alignment:
Q  12 atccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaa 71  Q
    |||| |||||||||||| ||||||||||||| ||||||  |||||||  |||||||||||    
T  9377090 atcccaagcagaagcaggaaacgaacatccactccccacaaacaaaatcctatcccctaa 9377149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 38
Target Start/End: Complemental strand, 16011797 - 16011768
Alignment:
Q  9 caaatccgaagcagaagcagaaaacgaaca 38  Q
    ||||||||||||||||||||||||||||||    
T  16011797 caaatccgaagcagaagcagaaaacgaaca 16011768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 64 - 229
Target Start/End: Complemental strand, 13170744 - 13170579
Alignment:
Q  64 tcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgag 163  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||  ||| |||||    
T  13170744 tcccctaaactcgccaacttgacccatttcttctccttttcatcaagtctgaacacatcaagctttaaaccatattcaccagggaaaccgtaacgatgag 13170645  T
Q  164 agtcatatatgtctactagcaacaactcacgctcactctctaccaggaatttcatgtcccctccat 229  Q
     |||||| ||||| |||||||||||||||| ||| ||||| |||| ||||||||||||||||||||    
T  13170644 ggtcatagatgtccactagcaacaactcaccctcgctctcgaccaagaatttcatgtcccctccat 13170579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 6 - 229
Target Start/End: Complemental strand, 44688903 - 44688680
Alignment:
Q  6 agacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctca 105  Q
    ||||||||||||||||| || |||||| ||| || |||||||||||||||||| ||||| |||||||||||  ||||| ||||||||||| | |||||||    
T  44688903 agacaaatccgaagcagtagtagaaaatgaatattcattccccaagaacaaaattctattccctaaactcgttaactttacccatttcttatgcttctca 44688804  T
Q  106 tcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctactagcaacaactcacgctcactctcta 205  Q
    |  ||  ||||||||||||||  || |||||||||||| ||||| ||||||| |||||||||||| ||||| ||||||||||||||||  ||||||||||    
T  44688803 ttgagcgtgaacacatcaagccgtagaccatcttcacccgggaacccaaaaccatgagagtcatagatgtccactagcaacaactcaccttcactctcta 44688704  T
Q  206 ccaggaatttcatgtcccctccat 229  Q
    |||||||||| |||||||||||||    
T  44688703 ccaggaattttatgtcccctccat 44688680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 229
Target Start/End: Original strand, 18991201 - 18991422
Alignment:
Q  5 cagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctc 104  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||  | || |   ||||| |||||   ||||    
T  18991201 cagataaatcagaagcagaagcagaaaacgaacatccattccccaagaacaaaaccctattccctaagctcttcgacct---ccattccttctttctctc 18991297  T
Q  105 atcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctactagcaacaactcacgctcactctct 204  Q
    || ||| || ||||| |  || |||| ||| | ||| |||||||| ||||||||||| |||||| | ||||| ||||||||||||||||  |||| ||||    
T  18991298 attaagcctaaacaccttcagttttagacctttttcgccagggaacccaaaacaatgcgagtcacagatgtccactagcaacaactcaccttcacactct 18991397  T
Q  205 accaggaatttcatgtcccctccat 229  Q
    |||| ||||||||| ||||||||||    
T  18991398 accaagaatttcatatcccctccat 18991422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 235213 - 235311
Alignment:
Q  8 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 106  Q
    ||||||||||||||||||||||||||||||||     ||||||||| |||||||||||||||||| | |||||||| ||||| ||||||||||| ||||    
T  235213 acaaatccgaagcagaagcagaaaacgaacatagcaaccccaagaagaaaactctatcccctaaatttgccaacttcacccacttcttctccttttcat 235311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 4439860 - 4439927
Alignment:
Q  8 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactc 75  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| || ||||||    
T  4439860 acaaatccgaagcagaagcagaaaacgaacatccattccccaaaaacaaaaccctatctcccaaactc 4439927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 119
Target Start/End: Original strand, 4428628 - 4428742
Alignment:
Q  5 cagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctc 104  Q
    ||||||| || |||||||| ||||||||| |||||||||||||||| |||||||| |||||||| ||||||| ||| || ||||||||   | |||||||    
T  4428628 cagacaactcagaagcagaggcagaaaacaaacatccattccccaaaaacaaaaccctatcccccaaactcgtcaatttcacccatttacgcgccttctc 4428727  T
Q  105 atcaagtctgaacac 119  Q
    |||||| || |||||    
T  4428728 atcaagcctaaacac 4428742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 8814478 - 8814385
Alignment:
Q  8 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcctt 101  Q
    |||||||| |||||||||||||||| |||||      |||||| ||||||||||||||||||||| |||||||||| ||||| |||||||||||    
T  8814478 acaaatccaaagcagaagcagaaaatgaacacaaggaccccaaaaacaaaactctatcccctaaattcgccaacttcacccacttcttctcctt 8814385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 106
Target Start/End: Complemental strand, 251510 - 251412
Alignment:
Q  8 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 106  Q
    |||||||||| |||||| ||||||| ||||||     |||||||||||||||||||||||||| | |||||||||| ||||| ||||| ||||| ||||    
T  251510 acaaatccgatgcagaaacagaaaatgaacatagccaccccaagaacaaaactctatcccctatattcgccaactttacccacttcttttccttttcat 251412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 231589 - 231674
Alignment:
Q  16 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcctt 101  Q
    ||||||||||||||||| ||||||     |||||||||||||||| ||||||||||| | |||||||| ||||| ||| |||||||    
T  231589 gaagcagaagcagaaaatgaacatagggaccccaagaacaaaactatatcccctaaattagccaacttcacccacttcatctcctt 231674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 246867 - 246958
Alignment:
Q  8 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcc 99  Q
    |||||||| |||||||||||||||| || ||      |||||||||||||||| |||| |||||| | |||||||| |||||||||||||||    
T  246867 acaaatccaaagcagaagcagaaaatgaccagaacaaccccaagaacaaaactgtatctcctaaattagccaacttcacccatttcttctcc 246958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 8 - 121
Target Start/End: Complemental strand, 20694417 - 20694304
Alignment:
Q  8 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| | |||  | ||||||||||||||||| |||||    
T  20694417 acaaatccgaagcagaagcagaaaacgaacatccattccccaaaaacaaaaccctatcccccaaacttgtcaaactcacccatttcttctccttttcatc 20694318  T
Q  108 aagtctgaacacat 121  Q
    ||| ||||||||||    
T  20694317 aagcctgaacacat 20694304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 7041496 - 7041612
Alignment:
Q  8 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 107  Q
    ||||||||||||||||| |||| ||||||||| | |  |||||||||||||| |||||||||||||| | |||||| ||||| ||||||||||||||||     
T  7041496 acaaatccgaagcagaaacagagaacgaacatacttctcccaagaacaaaaccctatcccctaaactagtcaacttcacccacttcttctccttctcatt 7041595  T
Q  108 aagtctgaacacatcaa 124  Q
    |||| | |||| |||||    
T  7041596 aagtttaaacaaatcaa 7041612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 7046839 - 7046937
Alignment:
Q  8 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 106  Q
    ||||||| |||  |||||||||||||||||||    ||||||||||||||||| |||||||||||||||  ||||| ||||| ||||||||||||||||    
T  7046839 acaaatctgaaaaagaagcagaaaacgaacattttatccccaagaacaaaactttatcccctaaactcgttaacttcacccacttcttctccttctcat 7046937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 7025793 - 7025854
Alignment:
Q  45 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 106  Q
    ||||||||||||||| ||||| |||||||||| |||||| ||||| ||||||||||||||||    
T  7025793 ccccaagaacaaaaccctatctcctaaactcgtcaacttcacccacttcttctccttctcat 7025854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 7029850 - 7029911
Alignment:
Q  45 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 106  Q
    ||||||||||||||| |||||||| ||||||| |||||| ||||| ||||||||||||||||    
T  7029850 ccccaagaacaaaaccctatccccgaaactcgtcaacttcacccacttcttctccttctcat 7029911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 9170854 - 9170915
Alignment:
Q  45 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 106  Q
    ||||||||||||||| ||||||||||||||||  || || ||||| ||||||||||||||||    
T  9170854 ccccaagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctccttctcat 9170915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 9159574 - 9159515
Alignment:
Q  45 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctc 104  Q
    ||||||||||||||| ||||||||||||||||  || || ||||| ||||||||||||||    
T  9159574 ccccaagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctccttctc 9159515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 7012857 - 7012918
Alignment:
Q  45 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 106  Q
    ||||||||||||||  ||||| |||||||| | |||||| ||||| ||||||||||||||||    
T  7012857 ccccaagaacaaaatcctatctcctaaacttgtcaacttcacccacttcttctccttctcat 7012918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 111
Target Start/End: Original strand, 3695687 - 3695792
Alignment:
Q  5 cagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctc 104  Q
    |||||||||||||||||  ||||||||| ||||||    | || |||||||||||||||||||||||||||  ||||||||  || ||||||| ||||||    
T  3695687 cagacaaatccgaagcaatagcagaaaatgaacatatgataccgaagaacaaaactctatcccctaaactctacaacttga-tcacttcttcttcttctc 3695785  T
Q  105 atcaagt 111  Q
    || ||||    
T  3695786 attaagt 3695792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 124
Target Start/End: Complemental strand, 450219 - 450111
Alignment:
Q  16 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctga 115  Q
    ||||||||||||||||| ||| |   ||  || |||||||||| | |||| |||||| ||  |||||||||||| || ||||||||||||||||| || |    
T  450219 gaagcagaagcagaaaaggaatacagatcgcctaagaacaaaattgtatctcctaaattcctcaacttgacccactttttctccttctcatcaagcctaa 450120  T
Q  116 acacatcaa 124  Q
    |||||||||    
T  450119 acacatcaa 450111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 18571108 - 18571213
Alignment:
Q  8 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaa---aactctatcccctaaactcgccaacttgacccatttcttctccttctc 104  Q
    |||||||||||||||||  |||||| |||| | |  | || ||||||||   |||| ||||||||||||||| ||| || ||||| ||||||||||||||    
T  18571108 acaaatccgaagcagaaatagaaaaagaacctgccatgcctaagaacaaaacaactgtatcccctaaactcgtcaatttcacccacttcttctccttctc 18571207  T
Q  105 atcaag 110  Q
    ||||||    
T  18571208 atcaag 18571213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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