View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6873A_low_115 (Length: 248)
Name: NF6873A_low_115
Description: NF6873A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6873A_low_115 |
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Alignment Details
Target: chr4 (Bit Score: 124; Significance: 7e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 108 - 235
Target Start/End: Complemental strand, 963345 - 963218
Alignment:
| Q |
108 |
agttgaaaatagaacctgtgtttgggagagactctaagtcctaaaacataagctagttttacataagctgaattccctcttgtaactgttttcacacaac |
207 |
Q |
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| T |
963345 |
agttgaaaatagaacctgtgtttgggagagactctaagtcctaaaacataagctagttttacataagctgaattccctcttgtaactgttttcacacaac |
963246 |
T |
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| Q |
208 |
cccttatcactccaacaacttctccttc |
235 |
Q |
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| T |
963245 |
cccttatcactccagcaacttctccttc |
963218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 963390 - 963352
Alignment:
| Q |
10 |
caaatttaacattcaaaaaagaaataataaacaacacta |
48 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
963390 |
caaatttaacattcaaaaaagaaataataaacaacacta |
963352 |
T |
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