View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6873A_low_120 (Length: 246)
Name: NF6873A_low_120
Description: NF6873A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6873A_low_120 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 30 - 224
Target Start/End: Complemental strand, 33810935 - 33810741
Alignment:
| Q |
30 |
gagatggtagcgttgtccctgctgacccacaggctcttgtgaagaagaagacacagtcttctagaagctggattgcttttgatggtactggccaagggtc |
129 |
Q |
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| T |
33810935 |
gagatggtagcgttgtccctgctgacccacaggctcttgtgaagaagaagacacagtcttctagaagctggattgcttttgatggtactggccaagggtc |
33810836 |
T |
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| Q |
130 |
tttgcttgatgtggacaagtatgctatcatgcatagggttcagattaatgcacgtgatcttagaatccttgatcccttgctctcttacccctcta |
224 |
Q |
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| T |
33810835 |
tttgcttgatgtggacaagtatgctatcatgcatagggttcagattaatgcacgtgatcttagaatccttgatcccttgctctcttacccctcta |
33810741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 30 - 224
Target Start/End: Complemental strand, 33870404 - 33870210
Alignment:
| Q |
30 |
gagatggtagcgttgtccctgctgacccacaggctcttgtgaagaagaagacacagtcttctagaagctggattgcttttgatggtactggccaagggtc |
129 |
Q |
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| T |
33870404 |
gagatggtagcgttgtccctgctgacccacaggctcttgtgaagaagaagacacagtcttctagaagctggattgcttttgatggtactggccaagggtc |
33870305 |
T |
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| Q |
130 |
tttgcttgatgtggacaagtatgctatcatgcatagggttcagattaatgcacgtgatcttagaatccttgatcccttgctctcttacccctcta |
224 |
Q |
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| T |
33870304 |
tttgcttgatgtggacaagtatgctatcatgcatagggttcagattaatgcacgtgatcttagaatccttgatcccttgctctcttacccctcta |
33870210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 72 - 223
Target Start/End: Complemental strand, 33831068 - 33830917
Alignment:
| Q |
72 |
agaagaagacacagtcttctagaagctggattgcttttgatggtactggccaagggtctttgcttgatgtggacaagtatgctatcatgcatagggttca |
171 |
Q |
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| T |
33831068 |
agaagaagacacagtcttctacaagttggattcagtttgatgctacaggccaagggtggattcatgatgtggacaagtatgttatcatgaatagggttca |
33830969 |
T |
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| Q |
172 |
gattaatgcacgtgatcttagaatccttgatcccttgctctcttacccctct |
223 |
Q |
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| T |
33830968 |
tattgatgcacgtgatcttagaatccttgatcctttgccctcttacccctct |
33830917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 72 - 223
Target Start/End: Complemental strand, 33893231 - 33893080
Alignment:
| Q |
72 |
agaagaagacacagtcttctagaagctggattgcttttgatggtactggccaagggtctttgcttgatgtggacaagtatgctatcatgcatagggttca |
171 |
Q |
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| T |
33893231 |
agaagaagacacagtcttctacaagttggattcagtttgatgctacaggccaagggtggattcatgatgtggacaagtatgttatcatgaatagggttca |
33893132 |
T |
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| Q |
172 |
gattaatgcacgtgatcttagaatccttgatcccttgctctcttacccctct |
223 |
Q |
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| T |
33893131 |
tattgatgcacgtgatcttagaatccttgatcctttgccctcttacccctct |
33893080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 66 - 221
Target Start/End: Original strand, 24408805 - 24408960
Alignment:
| Q |
66 |
ttgtgaagaagaagacacagtcttctagaagctggattgcttttgatggtactggccaagggtctttgcttgatgtggacaagtatgctatcatgcatag |
165 |
Q |
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| T |
24408805 |
ttgtgaagaagaagacacagtcttttggaagctggattgctttggatagtaatggccactggtctcaaattgatgtggacaagtatgctatcatgcatag |
24408904 |
T |
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| Q |
166 |
ggttcagattaatgcacgtgatcttagaatccttgatcccttgctctcttacccct |
221 |
Q |
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| T |
24408905 |
ggttcagattaatgcacatgatcttagaatccttgatcccttgctctcttacccct |
24408960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 135 - 223
Target Start/End: Complemental strand, 24410211 - 24410123
Alignment:
| Q |
135 |
ttgatgtggacaagtatgctatcatgcatagggttcagattaatgcacgtgatcttagaatccttgatcccttgctctcttacccctct |
223 |
Q |
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| T |
24410211 |
ttgatgtggacaagtatgctatcatgcatagggttcagattaatgcatgtgatcttagaatccttgatcccttgctctcttacccctct |
24410123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 24410676 - 24410634
Alignment:
| Q |
66 |
ttgtgaagaagaagacacagtcttctagaagctggattgcttt |
108 |
Q |
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| T |
24410676 |
ttgtgaagaagaagacacagtcttttggaagctggattgcttt |
24410634 |
T |
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