View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6873A_low_129 (Length: 245)
Name: NF6873A_low_129
Description: NF6873A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6873A_low_129 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 29 - 219
Target Start/End: Original strand, 48016829 - 48017020
Alignment:
| Q |
29 |
aatatcacgatcttcacacacaggagcatatacaatacatgtatctaacatataattttaattttgaccatggaacaaacttgtaatggatcaatccgat |
128 |
Q |
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| T |
48016829 |
aatatcacgatcttcacacacaggagcatatacaatacatgtatctaacatataattttaattttgaccatggaacaaacttgtactggatcaatccgat |
48016928 |
T |
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| Q |
129 |
ccattttttaaatttgctatgacgaggtcttggtggaacaatcagcagcaggctaatttgaatctcttatactatta-ttatttggagcaaa |
219 |
Q |
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| T |
48016929 |
ccattttttaaatttgctatgacgatgtcttggtggaacaatcagcagcaggctaatttgaatctcttatactattatttatttggagcaaa |
48017020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 53 - 87
Target Start/End: Original strand, 48012336 - 48012370
Alignment:
| Q |
53 |
agcatatacaatacatgtatctaacatataatttt |
87 |
Q |
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| T |
48012336 |
agcatatacaatacatgtatctaacatataatttt |
48012370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 53 - 87
Target Start/End: Original strand, 48012697 - 48012731
Alignment:
| Q |
53 |
agcatatacaatacatgtatctaacatataatttt |
87 |
Q |
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| T |
48012697 |
agcatatacaatacatgtatctaacatataatttt |
48012731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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