View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6873A_low_130 (Length: 244)

Name: NF6873A_low_130
Description: NF6873A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6873A_low_130
NF6873A_low_130
[»] chr6 (5 HSPs)
chr6 (22-244)||(341202-341424)
chr6 (22-242)||(332912-333132)
chr6 (22-241)||(337167-337386)
chr6 (105-242)||(347412-347549)
chr6 (120-242)||(356086-356208)


Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 22 - 244
Target Start/End: Complemental strand, 341424 - 341202
Alignment:
Q  22 catcatcactttcagcattgatttcatttttgttacaatttttctttagctcttcgcgctttgaagcaatacacgaaaagaggaattgatcaaatacctt 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  341424 catcatcactttcagcattgatttcatttttgttacaatttttctttagctcttcgcgctttgaagcaatacacgaaaagaggaattgatcaaatacctt 341325  T
Q  122 gcatgcctctgtcattttcttctcttctccgatttgaagccaactttgcaacttccaaacacaaatcggcacggtgtgtctatagaagatggactcttcc 221  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  341324 gcatgcctcagtcattttcttctcttctccgatttgaagccaactttgcaacttccaaacacaaatcggcacggtgtgtctatagaagatggactcttcc 341225  T
Q  222 gcttggttaaaagccttctcaga 244  Q
    |||||||||||||||||||||||    
T  341224 gcttggttaaaagccttctcaga 341202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 22 - 242
Target Start/End: Complemental strand, 333132 - 332912
Alignment:
Q  22 catcatcactttcagcattgatttcatttttgttacaatttttctttagctcttcgcgctttgaagcaatacacgaaaagaggaattgatcaaatacctt 121  Q
    |||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||| ||||||||| ||    
T  333132 catcgtcactttcaacattgatttcatttttgttacaattttgctttagctcttcgcgctttgaagctatacacgaaaataggaatttatcaaatacttt 333033  T
Q  122 gcatgcctctgtcattttcttctcttctccgatttgaagccaactttgcaacttccaaacacaaatcggcacggtgtgtctatagaagatggactcttcc 221  Q
    ||||||||| |||||||| |||||||| || |||||||||||  |||||| |||| |||||||||  |||||| ||||||||||||||||| | |||||     
T  333032 gcatgcctcggtcatttttttctcttccccaatttgaagccatttttgcatcttctaaacacaaacgggcacgatgtgtctatagaagatgcattcttca 332933  T
Q  222 gcttggttaaaagccttctca 242  Q
    |||||||||||||||||||||    
T  332932 gcttggttaaaagccttctca 332912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 22 - 241
Target Start/End: Complemental strand, 337386 - 337167
Alignment:
Q  22 catcatcactttcagcattgatttcatttttgttacaatttttctttagctcttcgcgctttgaagcaatacacgaaaagaggaattgatcaaatacctt 121  Q
    |||||| ||||| | |||| ||||||||||||||||  |||||||||||||||||||  |||||||| ||||||||| | ||||||||||||||||| ||    
T  337386 catcattactttgaccattaatttcatttttgttaccgtttttctttagctcttcgcattttgaagctatacacgaatataggaattgatcaaatacttt 337287  T
Q  122 gcatgcctctgtcattttcttctcttctccgatttgaagccaactttgcaacttccaaacacaaatcggcacggtgtgtctatagaagatggactcttcc 221  Q
    |||||| || |||||||| |||||||| ||||||||||||||||||||||||||||||||||||  |||||| |||||||| ||||||||||| |||||     
T  337286 gcatgcttcagtcatttttttctcttcaccgatttgaagccaactttgcaacttccaaacacaagccggcacagtgtgtctgtagaagatggattcttca 337187  T
Q  222 gcttggttaaaagccttctc 241  Q
    ||||||||||||||||||||    
T  337186 gcttggttaaaagccttctc 337167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 105 - 242
Target Start/End: Original strand, 347412 - 347549
Alignment:
Q  105 aattgatcaaataccttgcatgcctctgtcattttcttctcttctccgatttgaagccaactttgcaacttccaaacacaaatcggcacggtgtgtctat 204  Q
    |||||||||||||| |||||||| |  |||||||| |||||||| || |||||||||||  ||||||||||||||||||   | |||||  | |||||||    
T  347412 aattgatcaaatactttgcatgctttggtcatttttttctcttcaccaatttgaagccatttttgcaacttccaaacacttttaggcactatatgtctat 347511  T
Q  205 agaagatggactcttccgcttggttaaaagccttctca 242  Q
    |||| ||| |||||||   |||||||||||| ||||||    
T  347512 agaatatgcactcttcaatttggttaaaagctttctca 347549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 242
Target Start/End: Original strand, 356086 - 356208
Alignment:
Q  120 ttgcatgcctctgtcattttcttctcttctccgatttgaagccaactttgcaacttccaaacacaaatcggcacggtgtgtctatagaagatggactctt 219  Q
    ||||||||||  ||||| || |||||||| || |||||||||||  ||||||||||||||||||   | |||||  | ||||||||||| |||  |||||    
T  356086 ttgcatgccttggtcatatttttctcttcaccaatttgaagccatttttgcaacttccaaacacttttaggcactttatgtctatagaatatgccctctt 356185  T
Q  220 ccgcttggttaaaagccttctca 242  Q
    |   |||||| ||||||||||||    
T  356186 cgatttggttgaaagccttctca 356208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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