View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6873A_low_135 (Length: 243)
Name: NF6873A_low_135
Description: NF6873A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6873A_low_135 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 9 - 243
Target Start/End: Original strand, 340820 - 341054
Alignment:
| Q |
9 |
tggtgttatcacaactgatccattgaatgttcactacatcatgagcaagagctttgacaactttgtcaaaggtgatttgtttcgtgaaatgtttgaacct |
108 |
Q |
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| T |
340820 |
tggtgttatcacaactgatccattgaatgttcactacatcatgagcaagagctttgacaactttgtcaaaggtgatttgtttcgtgaaatgtttgaacct |
340919 |
T |
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| Q |
109 |
tttggtttaggaattttcactacagattcagatcaatggaaatacaataggaatcttctccactatctcttcaaacaaagaagctttgaagcttttcacg |
208 |
Q |
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| T |
340920 |
tttggtttaggaattttcactacagattcagatcaatggaaatacaataggaatcttctccaatatctcttcaaacaaagaagctttgaagcttttcaag |
341019 |
T |
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| Q |
209 |
agatgataattcacagctcacttgagaaatcattg |
243 |
Q |
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| T |
341020 |
agaagataattcacaacaaagttgagaaatcattg |
341054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 336789 - 337016
Alignment:
| Q |
16 |
atcacaactgatccattgaatgttcactacatcatgagcaagagctttgacaactttgtcaaaggtgatttgtttcgtgaaatgtttgaaccttttggtt |
115 |
Q |
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| T |
336789 |
atcacaaacgatccattgaatgttcactacatcatgagcaagaggtttgacaattttgagaaaggtgaaaggtttcgtgaaacgttccaaccttttggtt |
336888 |
T |
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| Q |
116 |
taggaattttcactacagattcagatcaatggaaatacaataggaatcttctccactatctcttcaaacaaagaagctttgaagcttttcacgagatgat |
215 |
Q |
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| T |
336889 |
taggaattttcactacagattcacatcaatggaaatacaataggaatcttctccaatatctcttcaaacaaagaagctttgaagcttttcaagagaaaat |
336988 |
T |
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| Q |
216 |
aattcacagctcacttgagaaatcattg |
243 |
Q |
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| T |
336989 |
cattcacaacaaagttgagaaatcattg |
337016 |
T |
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