View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6873A_low_138 (Length: 241)
Name: NF6873A_low_138
Description: NF6873A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6873A_low_138 |
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Alignment Details
Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 29222621 - 29222829
Alignment:
| Q |
18 |
tctcaaacaaaaaactatgagctaaaaacgactagccaagtaagctctcaactccaaaactccattaaaacaccaagcca-------aggagatatgtaa |
110 |
Q |
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| T |
29222621 |
tctcaaacaaaaaacaacgagctaaaaatggctagccaagtaagctcccaactccaaaactttaataaa-caccaagccattttagaaggagatatgtta |
29222719 |
T |
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| Q |
111 |
tttgatcaatggtttttaaaataatttaaaggacaaccaaatacaaagaaatggttg-tacaaatataatttctcttctaaaaagatagagatagctaga |
209 |
Q |
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| T |
29222720 |
tttgatcaatcatttttaaaataatttaaaggacaactaaatacatacaaataaatgatacatatatcatttctcttctaaaaagacaaagatagctaaa |
29222819 |
T |
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| Q |
210 |
acaaactacc |
219 |
Q |
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|||||||||| |
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| T |
29222820 |
acaaactacc |
29222829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 29226702 - 29226774
Alignment:
| Q |
147 |
ccaaatacaaagaaatggttgtacaaatataatttctcttctaaaaagatagagatagctagaacaaactacc |
219 |
Q |
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| T |
29226702 |
ccaaatacaaagaaatggttgtacaaatatgatttctcttctaaaaagacagagatagctagaacaaactacc |
29226774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 193
Target Start/End: Original strand, 305018 - 305052
Alignment:
| Q |
159 |
aaatggttgtacaaatataatttctcttctaaaaa |
193 |
Q |
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| T |
305018 |
aaatggttgtacaaatataatttctcttctcaaaa |
305052 |
T |
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