View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6873A_low_141 (Length: 239)
Name: NF6873A_low_141
Description: NF6873A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6873A_low_141 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 7 - 238
Target Start/End: Original strand, 34042787 - 34043018
Alignment:
| Q |
7 |
gttccgttgtgttagattcttctcccgctttgtgtttcatgagaaatttcttttattctgttattaatttgttgttgatttcatttccgaatcatatcgt |
106 |
Q |
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| T |
34042787 |
gttccgttgtgttagattcttctcccgctttgtgtttcatgagaaatttcttttattctgttattaatttgttgttgatttcatttccgaatcatatcgt |
34042886 |
T |
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| Q |
107 |
tgttgtgctgattttttgttacattcagctctcgaggagtaatgatcctgattcttttattccgtaccttgcgatgaactattccgatcgcttcttatcg |
206 |
Q |
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| T |
34042887 |
tgttgtgctgattttttgttacattcagctctcgaggagtgatgatcctgattcttttattccgtaccttgcgatgaactatttcgatcgcttcttatcg |
34042986 |
T |
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| Q |
207 |
cagcacaaattgaatctggaggtaatattgtt |
238 |
Q |
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| T |
34042987 |
cagcacaaattgaatctggaggtaatattgtt |
34043018 |
T |
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Back To:
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Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 67 - 238
Target Start/End: Complemental strand, 4046366 - 4046195
Alignment:
| Q |
67 |
ttattaatttgttgttgatttcatttccgaatcatatcgttgttgtgctgattttttgttacattcagctctcgaggagtaatgatcctgattcttttat |
166 |
Q |
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|||| ||||||| |||||||| |||| ||||||||| |||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||| |
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| T |
4046366 |
ttatcaatttgtagttgatttagtttctgaatcatatggttgctgtgctgattttttgttacattcagttctcgaggagtgatgatcctgattcatttat |
4046267 |
T |
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| Q |
167 |
tccgtaccttgcgatgaactattccgatcgcttcttatcgcagcacaaattgaatctggaggtaatattgtt |
238 |
Q |
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| T |
4046266 |
tccgtaccttgtgatgaactatttcaatcttttcaaatcgcagcacaaattgaatctggaggtaatattgtt |
4046195 |
T |
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