View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6873A_low_15 (Length: 413)
Name: NF6873A_low_15
Description: NF6873A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6873A_low_15 |
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| [»] scaffold0721 (1 HSPs) |
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| [»] scaffold0394 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 6 - 390
Target Start/End: Complemental strand, 31437253 - 31436869
Alignment:
| Q |
6 |
actgataagaagttgttttggccaagggaaaccgtttgaagcaaggcgaggttagcgagtgatggtaatgcgccagaaagagagttggactgaagaaaga |
105 |
Q |
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| T |
31437253 |
actgataagaagttgttttggccaagggaaaccgtttgaagcaaggcgaggttagcgagtgatggtaatgcgccagaaagagagttggactgaagaaaga |
31437154 |
T |
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| Q |
106 |
gggcggtgagttgggagagcgagttgagatcggaaggaagtgttccattgagtgacttggaagaaaggtcgatagatgttactcgatgtgcttggtcaca |
205 |
Q |
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| T |
31437153 |
gggaggtgagttgggagagcgagttgagatcggaaggaagtgttccattgagtgacttggaagaaaggtcgatagatgttactcggtgtgcttggtcaca |
31437054 |
T |
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| Q |
206 |
ttttacaccgttccaggtgcagaagttgctgctagttgaccaacctgacggagtaggactcaaagattttgctagctttgacatgaaagtgccatcgtct |
305 |
Q |
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| T |
31437053 |
ttttacaccgttccaggtgcagaagttgctgctaattgaccaacctgacggagtaggactcaaagattttgctagctttgacatgaaagtgccatcgtct |
31436954 |
T |
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| Q |
306 |
ccaatggtcatttggagaatatagaaacttaggaacaataacacatgtttcacttttgattttgagggagccatttagatttctt |
390 |
Q |
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| T |
31436953 |
ccaatggtcatttggagaatatagaaacttaggaacaataacacatgtttcacttttgattttgagggagccatttagatttctt |
31436869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 53 - 311
Target Start/End: Complemental strand, 15061542 - 15061284
Alignment:
| Q |
53 |
gaggttagcgagtgatggtaatgcgccagaaagagagttggactgaagaaagagggcggtgagttgggagagcgagttgagatcggaaggaagtgttcca |
152 |
Q |
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| T |
15061542 |
gaggttagcaagtgagggtaatgcaccggaaagagagttggaaaatagaactagggacgtgagtgatgaaagtgagttgagatcagaaggaattgttcca |
15061443 |
T |
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| Q |
153 |
ttgagtgacttggaagaaaggtcgatagatgttactcgatgtgcttggtcacattttacaccgttccaggtgcagaagttgctgctagttgaccaacctg |
252 |
Q |
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| T |
15061442 |
ataagtgacatggaagcaagcttgatagatgttacgctgttaaattcgtcgcatcttacgcctgtccagaggcagaaggatgtgttcgatgaccaacctg |
15061343 |
T |
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| Q |
253 |
acggagtaggactcaaagattttgctagctttgacatgaaagtgccatcgtctccaatg |
311 |
Q |
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| T |
15061342 |
atggtgtaggactcaaggattttgccagctttgacatgaaagtgccatcatctgcaatg |
15061284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0721 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0721
Description:
Target: scaffold0721; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 242 - 311
Target Start/End: Original strand, 6187 - 6256
Alignment:
| Q |
242 |
tgaccaacctgacggagtaggactcaaagattttgctagctttgacatgaaagtgccatcgtctccaatg |
311 |
Q |
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| T |
6187 |
tgaccaacctgatggtgtaggactcaaggattttgccagctttgacatgaaagtgccatcatctgcaatg |
6256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0394 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0394
Description:
Target: scaffold0394; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 242 - 311
Target Start/End: Original strand, 2706 - 2775
Alignment:
| Q |
242 |
tgaccaacctgacggagtaggactcaaagattttgctagctttgacatgaaagtgccatcgtctccaatg |
311 |
Q |
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| T |
2706 |
tgaccaacctgatggtgtaggactcaaggattttgccagctttgacatgaaagtgccatcatctgcaatg |
2775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 160
Target Start/End: Original strand, 38161951 - 38162084
Alignment:
| Q |
27 |
ccaagggaaaccgtttgaagcaaggcgaggttagcgagtgatggtaatgcgccagaaagagagttggactgaagaaagagggcggtgagttgggagagcg |
126 |
Q |
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|||||| ||||||||||||||| || |||||| ||||| || || || ||||| | || |||||||| |||||| | || | ||||| || ||||| | |
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| T |
38161951 |
ccaaggaaaaccgtttgaagcatggtgaggttcgcgagagaaggcaacgcgccggtgagtgagttggattgaagagaaagtgtagtgagctgagagagtg |
38162050 |
T |
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| Q |
127 |
agttgagatcggaaggaagtgttccattgagtga |
160 |
Q |
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| T |
38162051 |
agttcagatcggaaggtaatgttccggtgagtga |
38162084 |
T |
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