View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6873A_low_150 (Length: 230)

Name: NF6873A_low_150
Description: NF6873A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6873A_low_150
NF6873A_low_150
[»] chr1 (4 HSPs)
chr1 (27-223)||(7386417-7386613)
chr1 (64-200)||(19991215-19991350)
chr1 (117-201)||(19322649-19322733)
chr1 (27-58)||(19322751-19322782)
[»] chr5 (3 HSPs)
chr5 (27-224)||(4925202-4925404)
chr5 (64-224)||(35205787-35205947)
chr5 (83-224)||(35211203-35211344)
[»] chr3 (3 HSPs)
chr3 (64-222)||(52314493-52314651)
chr3 (64-220)||(53464903-53465059)
chr3 (99-196)||(1995809-1995906)
[»] chr4 (2 HSPs)
chr4 (67-223)||(23563558-23563714)
chr4 (95-199)||(48265287-48265391)
[»] chr2 (2 HSPs)
chr2 (129-225)||(39375508-39375604)
chr2 (27-70)||(39375627-39375670)
[»] chr8 (1 HSPs)
chr8 (108-225)||(40278487-40278604)
[»] chr7 (1 HSPs)
chr7 (101-222)||(45888823-45888944)


Alignment Details
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 27 - 223
Target Start/End: Original strand, 7386417 - 7386613
Alignment:
Q  27 tatactattaattaaaagaaataaaactcaaagtattacaaaatctaacaattactggaaaaggaacgtagtaatgcattgctaccatgtatagtttaac 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  7386417 tatactattaattaaaagaaataaaactcaaagtattacaaaatctgacaattacaggaaaaggaacgtagtaatgcattgctaccatgtataatttaac 7386516  T
Q  127 tactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatggacagacgatgcgtatgctcttag 223  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||  | ||||| ||||||||||||    
T  7386517 tactcaattccaaagccaattatccatgatattatgacacaagagcattggttagtgtgataccacccatatggatgggcgatgtgtatgctcttag 7386613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 64 - 200
Target Start/End: Complemental strand, 19991350 - 19991215
Alignment:
Q  64 acaaaatctaacaattactggaaaaggaacgtagtaatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatga 163  Q
    |||||||| ||||||| | |||||||||| |||||||| ||||  ||||||| ||||||||||||||||||| ||| |||||||||| ||||| ||||||    
T  19991350 acaaaatc-aacaattgcaggaaaaggaaggtagtaatccattattaccatggatagtttaactactcaatttcaatgccaattatccatgatcttatga 19991252  T
Q  164 cacgagagcattggttagtgtgataccacccatatgg 200  Q
    ||| | ||||||||  |||||||||||||||||||||    
T  19991251 cacaaaagcattgggcagtgtgataccacccatatgg 19991215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 117 - 201
Target Start/End: Complemental strand, 19322733 - 19322649
Alignment:
Q  117 atagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatgga 201  Q
    |||||||||||||||||||| ||||||||||||  ||||||||||||||| ||| | ||||||| ||| ||||||||||||||||    
T  19322733 atagtttaactactcaattctaaagccaattattcatgatattatgacacaagaacgttggttattgtaataccacccatatgga 19322649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 58
Target Start/End: Complemental strand, 19322782 - 19322751
Alignment:
Q  27 tatactattaattaaaagaaataaaactcaaa 58  Q
    ||||||||||||||||||||||||||||||||    
T  19322782 tatactattaattaaaagaaataaaactcaaa 19322751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 27 - 224
Target Start/End: Original strand, 4925202 - 4925404
Alignment:
Q  27 tatactattaattaaaagaaataaaactcaaagtatt-----------acaaaatctaacaattactggaaaaggaacgtagtaatgcattgctaccatg 115  Q
    |||||||||||||||||||||||| ||||||||||||           | ||||||||||||||||      |||||||||||||||||||| |||||||    
T  4925202 tatactattaattaaaagaaataatactcaaagtattctaaaatatgtataaaatctaacaattac------aggaacgtagtaatgcattgttaccatg 4925295  T
Q  116 tatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatggacagacgatgcgtat 215  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4925296 tatagtttaactactcaattccaaagccaattatccatgatattatgacacaagagcattggttagtgtgataccacccatatggacagacgatgcgtat 4925395  T
Q  216 gctcttagt 224  Q
    |||||||||    
T  4925396 gctcttagt 4925404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 64 - 224
Target Start/End: Original strand, 35205787 - 35205947
Alignment:
Q  64 acaaaatctaacaattactggaaaaggaacgtagtaatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatga 163  Q
    ||||||||  |||||| | |||||||||| | ||||||||||| || ||||| |||||||||| |||||||| ||| |||||||||  ||||| ||||||    
T  35205787 acaaaatcagacaattgcaggaaaaggaaggcagtaatgcattacttccatggatagtttaaccactcaatttcaatgccaattattcatgatcttatga 35205886  T
Q  164 cacgagagcattggttagtgtgataccacccatatggacagacgatgcgtatgctcttagt 224  Q
    ||| | |||||||| || ||||||||||||||||||  ||| ||||| | |||||||||||    
T  35205887 cacaaaagcattgggtaatgtgataccacccatatgtgcaggcgatgtgcatgctcttagt 35205947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 83 - 224
Target Start/End: Complemental strand, 35211344 - 35211203
Alignment:
Q  83 ggaaaaggaacgtagtaatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagt 182  Q
    |||||||||| | ||||||||||| |||||||| |||||||||| |||||||| ||| |||||||||  ||||| ||||||||| | |||||||| || |    
T  35211344 ggaaaaggaaggcagtaatgcattactaccatggatagtttaaccactcaatttcaatgccaattattcatgatcttatgacacaaaagcattgggtaat 35211245  T
Q  183 gtgataccacccatatggacagacgatgcgtatgctcttagt 224  Q
    |||||||||||||||||  |||  |||| | |||||||||||    
T  35211244 gtgataccacccatatgtgcaggtgatgtgcatgctcttagt 35211203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 64 - 222
Target Start/End: Original strand, 52314493 - 52314651
Alignment:
Q  64 acaaaatctaacaattactggaaaaggaacgtagtaatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatga 163  Q
    ||||||||  |||||| | |||||||||| ||||||||||||| |||||||| ||||||||||||||||||| ||| |||||||||  ||||| ||||||    
T  52314493 acaaaatcagacaattgcaggaaaaggaaggtagtaatgcattactaccatggatagtttaactactcaatttcaatgccaattattcatgatcttatga 52314592  T
Q  164 cacgagagcattggttagtgtgataccacccatatggacagacgatgcgtatgctctta 222  Q
    ||| | ||||||||  | ||||||||||||||||||  ||| ||||| | |||||||||    
T  52314593 cacaaaagcattgggcaatgtgataccacccatatgtgcaggcgatgtgcatgctctta 52314651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 64 - 220
Target Start/End: Original strand, 53464903 - 53465059
Alignment:
Q  64 acaaaatctaacaattactggaaaaggaacgtagtaatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatga 163  Q
    ||||||||  |||||| | |||||||||| ||||||||||||| |||||||| ||||||||||||||||||| ||| |||||||||  ||||| ||||||    
T  53464903 acaaaatcagacaattgcaggaaaaggaaggtagtaatgcattactaccatggatagtttaactactcaatttcaatgccaattattcatgatcttatga 53465002  T
Q  164 cacgagagcattggttagtgtgataccacccatatggacagacgatgcgtatgctct 220  Q
    ||| | ||||||||  | ||||||||||||||||||  ||| ||||| | |||||||    
T  53465003 cacaaaagcattgggcaatgtgataccacccatatgtgcaggcgatgtgcatgctct 53465059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 196
Target Start/End: Original strand, 1995809 - 1995906
Alignment:
Q  99 aatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccat 196  Q
    ||||||||||||| |||  | ||||| |||||||  ||||| |||||||||| | ||||||||||| | || ||||| || |||||  ||||||||||    
T  1995809 aatgcattgctactatggttggtttagctactcatatccaatgccaattatccaagatattatgactcaagtgcattagtcagtgtattaccacccat 1995906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 67 - 223
Target Start/End: Original strand, 23563558 - 23563714
Alignment:
Q  67 aaatctaacaattactggaaaaggaacgtagtaatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacac 166  Q
    |||||| |||||| | |||||||||| ||||||||||||| | |||||| ||||||||||||||||||| ||| | |||||||| ||||| |||||||||    
T  23563558 aaatctgacaattgcaggaaaaggaaggtagtaatgcattaccaccatggatagtttaactactcaatttcaatgtcaattatccatgatcttatgacac 23563657  T
Q  167 gagagcattggttagtgtgataccacccatatggacagacgatgcgtatgctcttag 223  Q
     | ||||||||  |||||||||||||||||||   ||| ||||| | ||||||||||    
T  23563658 aaaagcattgggcagtgtgataccacccatatatgcagccgatgtgcatgctcttag 23563714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 95 - 199
Target Start/End: Original strand, 48265287 - 48265391
Alignment:
Q  95 tagtaatgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccaccc 194  Q
    |||||||||||| |||||||| ||||||||||||||||||| ||| |||||||||| ||||| ||||||||| | ||||||||  |||||||||||||||    
T  48265287 tagtaatgcattactaccatggatagtttaactactcaatttcaatgccaattatccatgatcttatgacacaaaagcattggacagtgtgataccaccc 48265386  T
Q  195 atatg 199  Q
    |||||    
T  48265387 atatg 48265391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 129 - 225
Target Start/End: Complemental strand, 39375604 - 39375508
Alignment:
Q  129 ctcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatggacagacgatgcgtatgctcttagtg 225  Q
    |||||||||||||||||||||| ||||||||||||||| |||| |||||||||| ||||||||||||||||||||| | ||| ||||||||||||||    
T  39375604 ctcaattccaaagccaattatccatgatattatgacacaagagtattggttagtatgataccacccatatggacaggcaatgtgtatgctcttagtg 39375508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 70
Target Start/End: Complemental strand, 39375670 - 39375627
Alignment:
Q  27 tatactattaattaaaagaaataaaactcaaagtattacaaaat 70  Q
    |||| ||||||||||||||||||||||| |||||||||||||||    
T  39375670 tatattattaattaaaagaaataaaacttaaagtattacaaaat 39375627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 108 - 225
Target Start/End: Complemental strand, 40278604 - 40278487
Alignment:
Q  108 ctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatggacagacg 207  Q
    |||||||| ||||||||||||||||||| ||| | |||||||| ||||| ||||||||| | ||||||||  ||||||||||||||||||||  ||| ||    
T  40278604 ctaccatggatagtttaactactcaatttcaatgtcaattatccatgattttatgacacaaaagcattggccagtgtgataccacccatatgtgcaggcg 40278505  T
Q  208 atgcgtatgctcttagtg 225  Q
    ||| ||||||||| ||||    
T  40278504 atgtgtatgctctaagtg 40278487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 222
Target Start/End: Original strand, 45888823 - 45888944
Alignment:
Q  101 tgcattgctaccatgtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatgg 200  Q
    |||||||| || ||| ||| |||| |||||||  ||||| |||||||||| | | || |||||||| | ||||||||||| |||  ||||||| || | |    
T  45888823 tgcattgcaactatggataatttagctactcatatccaatgccaattatccaagttactatgacacaaaagcattggttaatgtattaccacctattttg 45888922  T
Q  201 acagacgatgcgtatgctctta 222  Q
    || ||||||| |||||||||||    
T  45888923 accgacgatgtgtatgctctta 45888944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University