View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6873A_low_151 (Length: 230)
Name: NF6873A_low_151
Description: NF6873A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6873A_low_151 |
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Alignment Details
Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 38 - 224
Target Start/End: Original strand, 33713857 - 33714042
Alignment:
| Q |
38 |
gaaaggtgccattttttgacaggttcatttatttcccaaatcctttgaaatctagttatcttatctgtacaaagaaataaattacattttgatcaaaaat |
137 |
Q |
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| T |
33713857 |
gaaaggtaccattttttgacaggttcatttatttcccaaatcctttgaaatctagttatcttatctgtacaaagaaattaattacattttgatcaaaaat |
33713956 |
T |
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| Q |
138 |
ttaagccataagttcaatcagataatattctcttgttctcaaatattggtaactatggctttgtacagagtatgttatatttgatta |
224 |
Q |
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| T |
33713957 |
ttaagccataagttcaatcagataatactctcttgttctcaaatattggtaactatggc-ttgtacagagtatgttatatttgatta |
33714042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 49 - 134
Target Start/End: Original strand, 21355755 - 21355836
Alignment:
| Q |
49 |
ttttttgacaggttcatttatttcccaaatcctttgaaatctagttatcttatctgtacaaagaaataaattacattttgatcaaa |
134 |
Q |
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| T |
21355755 |
ttttttgacaggttcattt----cccaaatcctttgaaattttgttatcttataagtacaaagaaatgaatttcattttgatcaaa |
21355836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 85 - 160
Target Start/End: Original strand, 21257215 - 21257290
Alignment:
| Q |
85 |
aaatctagttatcttatctgtacaaagaaataaattacattttgatcaaaaatttaagccataagttcaatcagat |
160 |
Q |
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||||||| ||||||||||| |||||||||| ||||||||||||| | || || |||||||||||||||||||||| |
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| T |
21257215 |
aaatctacttatcttatctacacaaagaaatcaattacattttgaacgaacatgtaagccataagttcaatcagat |
21257290 |
T |
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