View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6873A_low_152 (Length: 230)

Name: NF6873A_low_152
Description: NF6873A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6873A_low_152
NF6873A_low_152
[»] chr1 (1 HSPs)
chr1 (44-208)||(47288854-47289018)
[»] chr4 (2 HSPs)
chr4 (84-208)||(15664320-15664444)
chr4 (85-182)||(30785512-30785609)
[»] chr3 (1 HSPs)
chr3 (161-217)||(43487262-43487318)
[»] scaffold0179 (1 HSPs)
scaffold0179 (23-76)||(33065-33118)
[»] chr7 (1 HSPs)
chr7 (119-183)||(42675323-42675387)
[»] chr8 (2 HSPs)
chr8 (108-183)||(2543098-2543172)
chr8 (108-210)||(2533533-2533634)
[»] chr5 (1 HSPs)
chr5 (141-211)||(33318283-33318353)


Alignment Details
Target: chr1 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 44 - 208
Target Start/End: Complemental strand, 47289018 - 47288854
Alignment:
Q  44 gtgtgtatggtttaaaaggggtgtctacctaaaattatccttgtttatgggatcaaaattttcgaaataagacataatacatctatcaaacaaattaata 143  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  47289018 gtgtgtatggttcaaaaagggtgtctacctaaaattatccttgtttatgggatcaaaattttcgaaataaggtataatacatctatcaaacaaattaata 47288919  T
Q  144 tcttttgactttctcacttctactaatttttgacaaataataacatttgtggtagctaaatatat 208  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  47288918 tcttttgactttctcacttctactaatttttgacaaataagcacatttgtggtagctaaatatat 47288854  T

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Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 84 - 208
Target Start/End: Original strand, 15664320 - 15664444
Alignment:
Q  84 ttgtttatgggatcaaaattttcgaaataagacataatacatctatcaaacaaattaatatcttttgactttctcacttctactaatttttgacaaataa 183  Q
    |||||||||||||||||| |||  ||||||||||||| ||||||||||||||| | |||||||||||| ||||  | ||||||||  |||||||||||||    
T  15664320 ttgtttatgggatcaaaagttttaaaataagacataaaacatctatcaaacaagtaaatatcttttgattttcctatttctactagcttttgacaaataa 15664419  T
Q  184 taacatttgtggtagctaaatatat 208  Q
       |||||| |||||||||||||||    
T  15664420 actcatttgcggtagctaaatatat 15664444  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 182
Target Start/End: Original strand, 30785512 - 30785609
Alignment:
Q  85 tgtttatgggatcaaaattttcgaaataagacataatacatctatcaaacaaattaatatcttttgactttctcacttctactaatttttgacaaata 182  Q
    |||||| | |||||||| | || |||||| ||  |||| |||||| |||||| | ||||| ||||| |||||  | ||||||||||||||||||||||    
T  30785512 tgtttaagagatcaaaagtgtcaaaataatacggaatatatctattaaacaagtgaatatattttggctttcctatttctactaatttttgacaaata 30785609  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 43487262 - 43487318
Alignment:
Q  161 ttctactaatttttgacaaataataacatttgtggtagctaaatatatattcttgga 217  Q
    ||||||||||||| ||||||||||  ||||||||||||||||||||||||| |||||    
T  43487262 ttctactaattttcgacaaataatctcatttgtggtagctaaatatatattattgga 43487318  T

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Target: scaffold0179 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 33118 - 33065
Alignment:
Q  23 gccacatgggatgtgtgtagagtgtgtatggtttaaaaggggtgtctacctaaa 76  Q
    |||||||||||||||||||  |||||||||||| ||||||| ||||||| ||||    
T  33118 gccacatgggatgtgtgtatggtgtgtatggttcaaaagggatgtctacgtaaa 33065  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 42675323 - 42675387
Alignment:
Q  119 aatacatctatcaaacaaattaatatcttttgactttctcacttctactaatttttgacaaataa 183  Q
    ||||| |||||||||||| |  ||||||||||||||| | | |||||||| ||||||||||||||    
T  42675323 aatacttctatcaaacaagtagatatcttttgactttttaatttctactagtttttgacaaataa 42675387  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 183
Target Start/End: Original strand, 2543098 - 2543172
Alignment:
Q  108 aaataagacataatacatctatcaaacaaattaatatcttttgactttctcacttctactaatttttgacaaataa 183  Q
    |||||||||| |||||||||||||||||| |  || |||||||||||||| | || ||||| ||||||| ||||||    
T  2543098 aaataagacaaaatacatctatcaaacaagtagatgtcttttgactttctta-ttttactagtttttgataaataa 2543172  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 210
Target Start/End: Original strand, 2533533 - 2533634
Alignment:
Q  108 aaataagacataatacatctatcaaacaaattaatatcttttgactttctcacttctactaatttttgacaaataataacatttgtggtagctaaatata 207  Q
    |||||| ||| |||||||||||||||||| |  || ||||| |||||||| | || ||||| ||||||| ||||||   ||||||||||| ||| |||||    
T  2533533 aaataaaacaaaatacatctatcaaacaagtagatgtcttt-gactttcttatttttactagtttttgataaataaattcatttgtggtaactatatata 2533631  T
Q  208 tat 210  Q
    |||    
T  2533632 tat 2533634  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 211
Target Start/End: Original strand, 33318283 - 33318353
Alignment:
Q  141 atatcttttgactttctcacttctactaatttttgacaaataataacatttgtggtagctaaatatatatt 211  Q
    |||| |||||||||||| | ||| |||| ||||||||||||||   ||||| ||||||| |||||||||||    
T  33318283 atattttttgactttcttatttcaactagtttttgacaaataaattcatttatggtagcaaaatatatatt 33318353  T

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