View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6873A_low_16 (Length: 407)
Name: NF6873A_low_16
Description: NF6873A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6873A_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Original strand, 4322519 - 4322919
Alignment:
| Q |
1 |
attcaaaatcaaaatatcgaattaatccttttatttagcagaaaaaatttgattaattcttatcaaacaagtaaaatgtacatgcaacgatgaagcttta |
100 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4322519 |
attcaaaatcagaatatcgaattaatccttttatttagcagaattttttttattaattcttatcaaacaagtaaaatgtacatgcaacgcataagcttta |
4322618 |
T |
|
| Q |
101 |
tttaattaagatatatgaagaaaatatacgtgaccttatatcctatttcaatgtatttgatagcaacaagttctcctgtcttcttgtctttagccaacct |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4322619 |
tttaattaagatatatgaagaaaatatacttgaccttatatcctctttcaatgtatttgatagcaacaagttctcctgtctttttgtctttagccaacct |
4322718 |
T |
|
| Q |
201 |
agtcactccaaagtttccagaaccaaggtccttcaatatctcgtatctttcctcctccatttcacagtccaaataatactgttcaagtgacgatccaatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4322719 |
agtcactccaaagtttccagaaccaaggtccttcaatatctcgtatctttcctcctccatttcacagtccaaataatactgttcaattgacgatccaatg |
4322818 |
T |
|
| Q |
301 |
ataaaaatgaatgaaaaataagtgatttagtcaaaactgaaataacattgtaatgaaaatgagaaggagaaaaatgtgaattagaaattagacaaagaaa |
400 |
Q |
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| T |
4322819 |
ataaaaatgaataaaacataagtgatttagtcaaaactgaaataacattgtaatgaaaatgagaaggagaaaaatgtgaattagaaattagacaaagaaa |
4322918 |
T |
|
| Q |
401 |
a |
401 |
Q |
| |
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| |
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| T |
4322919 |
a |
4322919 |
T |
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Back To:
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Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 151 - 251
Target Start/End: Complemental strand, 41124498 - 41124398
Alignment:
| Q |
151 |
atgtatttgatagcaacaagttctcctgtcttcttgtctttagccaacctagtcactccaaagtttccagaaccaaggtccttcaatatctcgtatcttt |
250 |
Q |
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|||||||||| |||||||||||| || || || ||||||||||||||||||| || ||||| |||||||||||||| ||||||||| ||| ||||||| |
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| T |
41124498 |
atgtatttgagagcaacaagttccccagtatttttgtctttagccaacctagcaacaccaaaatttccagaaccaagttccttcaatggctcatatcttt |
41124399 |
T |
|
| Q |
251 |
c |
251 |
Q |
| |
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| |
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|
| T |
41124398 |
c |
41124398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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