View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6873A_low_160 (Length: 226)
Name: NF6873A_low_160
Description: NF6873A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6873A_low_160 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 19438171 - 19437952
Alignment:
| Q |
1 |
tagagatttcaatttcactatcatcagcatctgctgctaaggctgcaacaacaggaaaccttctttgatttactccaaaggccttcttcaccaatggagg |
100 |
Q |
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| T |
19438171 |
tagagatttcaatttcactatcatcagcatctgctgctaaggctgtaacaactggaaaccttctttgatttactccaaaggccttcttcaccaatggaga |
19438072 |
T |
|
| Q |
101 |
gaacaccaagcttgaatttatagactcatgttgaagtgttctagacttcaacaatccataactagttgaacatgaaactctttttggtaacagaaaaact |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
19438071 |
gaacaccaagcttgaatttatagactcatgttgaagtgttctagacttcaacaatccataactagttgaacttgaaactctttttggtaacagaaaaact |
19437972 |
T |
|
| Q |
201 |
gaagatatttgaggtctttg |
220 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
19437971 |
gaagatatttgaggtctttg |
19437952 |
T |
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