View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6873A_low_162 (Length: 225)
Name: NF6873A_low_162
Description: NF6873A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6873A_low_162 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 8946988 - 8947194
Alignment:
| Q |
19 |
tgttgcaaaatgatgaattgttggtatttgcaaattgacataacttccctttccattttgaagggattttagtcattccattatcattaaaactttcact |
118 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8946988 |
tgttgcaaaatgatgaattgttgctattttcaaattgacataacttccctttccattttgaagggattttagtcattccattatcattaaaactttcact |
8947087 |
T |
|
| Q |
119 |
ttcgggccaaacacctgagtcaatcaaaccaataatgacatcttgaccaaacttagaagctggccatgccccttcgaatggattgaggccaaggaattgt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8947088 |
ctcgggccaaacacctgagtcaatcaaaccaataatgacatcttgaccaaacttagaagctggccatgccccttcaaatggattgaggccaaggaattgt |
8947187 |
T |
|
| Q |
219 |
ggtgagt |
225 |
Q |
| |
|
||||||| |
|
|
| T |
8947188 |
ggtgagt |
8947194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 8973507 - 8973301
Alignment:
| Q |
19 |
tgttgcaaaatgatgaattgttggtatttgcaaattgacataacttccctttccattttgaagggattttagtcattccattatcattaaaactttcact |
118 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||||||| | |||||||||||||||||| |||| || ||| ||||||| || ||||||||||| |
|
|
| T |
8973507 |
tgttgcaaaaagatgaattgttggtattttcaaattgacataattgccctttccattttgaaggaatttgaggcatgtcattatctttgaaactttcact |
8973408 |
T |
|
| Q |
119 |
ttcgggccaaacacctgagtcaatcaaaccaataatgacatcttgaccaaacttagaagctggccatgccccttcgaatggattgaggccaaggaattgt |
218 |
Q |
| |
|
||| ||||||||||| | ||||||| ||||| ||||||||||| ||| | | |||||||||||||||||||| | ||| ||| ||||||||||||||| |
|
|
| T |
8973407 |
ttctggccaaacaccggtatcaatcataccaacaatgacatctttgccataatcagaagctggccatgcccctttgtatgaattaaggccaaggaattgt |
8973308 |
T |
|
| Q |
219 |
ggtgagt |
225 |
Q |
| |
|
||||||| |
|
|
| T |
8973307 |
ggtgagt |
8973301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 8962105 - 8961899
Alignment:
| Q |
19 |
tgttgcaaaatgatgaattgttggtatttgcaaattgacataacttccctttccattttgaagggattttagtcattccattatcattaaaactttcact |
118 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||| | |||||||||||| ||||||||||| |
|
|
| T |
8962105 |
tgttgcaaaaagatgaattgttggtattttcaaattgacataatttccctttccattttgaaggaattttagtaaatccattatcattgaaactttcact |
8962006 |
T |
|
| Q |
119 |
ttcgggccaaacacctgagtcaatcaaaccaataatgacatcttgaccaaacttagaagctggccatgccccttcgaatggattgaggccaaggaattgt |
218 |
Q |
| |
|
||| ||||||||||| | ||||||| ||||| ||||||||||| ||| | | ||||||| |||| |||||| | | ||||| || ||||||||||| |
|
|
| T |
8962005 |
ttctggccaaacaccggtatcaatcacaccaacaatgacatcttttccataatcagaagctagccacacccctttgtagggattaagaccaaggaattga |
8961906 |
T |
|
| Q |
219 |
ggtgagt |
225 |
Q |
| |
|
||||||| |
|
|
| T |
8961905 |
ggtgagt |
8961899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 49 - 225
Target Start/End: Original strand, 21688169 - 21688345
Alignment:
| Q |
49 |
caaattgacataacttccctttccattttgaagggattttagtcattccattatcattaaaactttcactttcgggccaaacacctgagtcaatcaaacc |
148 |
Q |
| |
|
||||||||||||| | |||||||||||||| || |||||||||||||||| ||| |||||||||||||||| ||||||||||| | ||| || | ||| |
|
|
| T |
21688169 |
caaattgacataattggcctttccattttgagggtattttagtcattccatcatctctaaaactttcactttctggccaaacaccagtgtctattacacc |
21688268 |
T |
|
| Q |
149 |
aataatgacatcttgaccaaacttagaagctggccatgccccttcgaatggattgaggccaaggaattgtggtgagt |
225 |
Q |
| |
|
|| ||||| ||||| |||||| | ||||| ||||||||||||| ||||||| |||||||| ||||| ||||||| |
|
|
| T |
21688269 |
aacaatgatatctttaccaaaatcagaagttggccatgcccctctatatggattaaggccaagaaattgaggtgagt |
21688345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 144
Target Start/End: Original strand, 34963779 - 34963857
Alignment:
| Q |
66 |
cctttccattttgaagggattttagtcattccattatcattaaaactttcactttcgggccaaacacctgagtcaatca |
144 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||| || || || |||||||| |||||||| |||| |||||||| |
|
|
| T |
34963779 |
cctttccattttgaaggaattttagtcattccatcatctttgaagctctcactttctggccaaactcctgtgtcaatca |
34963857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University