View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6873A_low_163 (Length: 223)
Name: NF6873A_low_163
Description: NF6873A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6873A_low_163 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 20816619 - 20816837
Alignment:
| Q |
1 |
ggaagaacacaaccagggaaatgctttagactttatacggaaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgagatctaatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20816619 |
ggaagaacacaaccagggaaatgctttagactttatacggaaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgagatctaatc |
20816718 |
T |
|
| Q |
101 |
gcgccaacacagttcttactttgaagaaattgggtatagacgatttagtgcattttgactttatggaccctcctgcaccagaaaccttaatgcgcgcttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20816719 |
tcgccaacacagttcttactttgaagaaattgggtatagacgatttagtacattttgactttatggaccctcctgcaccagaaaccttaatgcgcgcttt |
20816818 |
T |
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| Q |
201 |
ggaagtgttgaattacttg |
219 |
Q |
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||||||||||||||||||| |
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| T |
20816819 |
ggaagtgttgaattacttg |
20816837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 38779526 - 38779308
Alignment:
| Q |
1 |
ggaagaacacaaccagggaaatgctttagactttatacggaaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgagatctaatc |
100 |
Q |
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|||||||| || || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38779526 |
ggaagaactcagccggggaaatgctttagactttataccgaaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgagatctaatc |
38779427 |
T |
|
| Q |
101 |
gcgccaacacagttcttactttgaagaaattgggtatagacgatttagtgcattttgactttatggaccctcctgcaccagaaaccttaatgcgcgcttt |
200 |
Q |
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| T |
38779426 |
ttgccaacacagttcttacattgaagaaactgggtatagatgatttagttcattttgacttcatggaccctcctgcccctgaaaccttgatgcgtgcttt |
38779327 |
T |
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| Q |
201 |
ggaagtgttgaattacttg |
219 |
Q |
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||||||||||||||||||| |
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| T |
38779326 |
ggaagtgttgaattacttg |
38779308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 33388485 - 33388268
Alignment:
| Q |
1 |
ggaagaacacaaccagggaaatgctttagactttatacggaaagaagtttcaataatgatcttcagccgcagacctatcctgaaattttgagatctaatc |
100 |
Q |
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|||||||| ||||| |||||||||| |||||| ||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33388485 |
ggaagaactcaaccggggaaatgctatagactctataccgaaataagtttcagtaatgatcttcagccgcagacctatcctgaaattttgagatctaatc |
33388386 |
T |
|
| Q |
101 |
gcgccaacacagttcttactttgaagaaattgggtatagacgatttagtgcattttgactttatggaccctcctgcaccagaaaccttaatgcgcgcttt |
200 |
Q |
| |
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|| ||||| |||||||| |||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| || |||||||||||||| ||||| |
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| T |
33388385 |
ttgcaaacacggttcttacattgaagaaattgggtatagatgatttagttcattttgacttcatggaccctcctgctcctgaaaccttaatgcgtgcttt |
33388286 |
T |
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| Q |
201 |
ggaagtgttgaattactt |
218 |
Q |
| |
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|||||||||||||||||| |
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|
| T |
33388285 |
ggaagtgttgaattactt |
33388268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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