View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6873A_low_170 (Length: 218)
Name: NF6873A_low_170
Description: NF6873A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6873A_low_170 |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 7 - 161
Target Start/End: Complemental strand, 36970573 - 36970419
Alignment:
| Q |
7 |
ttggagttcatttgtagttcctttccttttctgaagatggaatcaatgaagaagaacatttctaattttgttggatgtatgtgaggtaattaatttactt |
106 |
Q |
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| T |
36970573 |
ttggagttaatatgtagttcctttccttttctgaagatggaatcaatgaagaagaacatttctaattttgttggatgtatgtgaggtaattaatttactt |
36970474 |
T |
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| Q |
107 |
gcaaattaaaattaaggggctttcctttcttctatctttgatataaagcactgta |
161 |
Q |
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| T |
36970473 |
gcaaattaaaattaaggtgctttcctttcttctatctttgatataaagcactgta |
36970419 |
T |
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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 218
Target Start/End: Complemental strand, 36970397 - 36970366
Alignment:
| Q |
187 |
ttctgtgcttcttatggtataaactattaaga |
218 |
Q |
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| T |
36970397 |
ttctgtgcttcttatggtataaactattaaga |
36970366 |
T |
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