View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6873A_low_172 (Length: 217)

Name: NF6873A_low_172
Description: NF6873A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6873A_low_172
NF6873A_low_172
[»] chr3 (21 HSPs)
chr3 (114-196)||(19849354-19849436)
chr3 (116-189)||(20015886-20015959)
chr3 (116-202)||(19858429-19858515)
chr3 (24-95)||(19848795-19848866)
chr3 (116-184)||(20046480-20046548)
chr3 (116-167)||(17115073-17115124)
chr3 (120-202)||(19944078-19944160)
chr3 (120-185)||(24839666-24839731)
chr3 (116-188)||(19818920-19818992)
chr3 (111-195)||(19956439-19956523)
chr3 (27-95)||(20036845-20036913)
chr3 (24-92)||(26646818-26646886)
chr3 (21-100)||(20005219-20005298)
chr3 (116-195)||(20036282-20036361)
chr3 (122-182)||(19832235-19832295)
chr3 (27-79)||(19838195-19838247)
chr3 (27-79)||(19955886-19955938)
chr3 (21-92)||(19818362-19818433)
chr3 (21-79)||(19812085-19812143)
chr3 (26-79)||(26651843-26651896)
chr3 (27-79)||(19950935-19950987)
[»] chr5 (2 HSPs)
chr5 (116-196)||(9815394-9815474)
chr5 (116-196)||(26354605-26354685)
[»] chr8 (1 HSPs)
chr8 (70-108)||(22685874-22685912)
[»] chr7 (5 HSPs)
chr7 (118-167)||(12497567-12497616)
chr7 (118-167)||(12521432-12521481)
chr7 (116-184)||(12579781-12579849)
chr7 (117-184)||(12519486-12519553)
chr7 (116-166)||(12495703-12495753)
[»] chr4 (3 HSPs)
chr4 (116-173)||(6397440-6397497)
chr4 (33-73)||(6397999-6398039)
chr4 (33-73)||(6398078-6398118)
[»] chr1 (1 HSPs)
chr1 (27-82)||(1717025-1717080)


Alignment Details
Target: chr3 (Bit Score: 67; Significance: 6e-30; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 114 - 196
Target Start/End: Original strand, 19849354 - 19849436
Alignment:
Q  114 atcctttattgtttagatggcataaggttcaggccttgaaaattgacaatgttaggttggtcttagactcagctatgaatgat 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |||||| |||||    
T  19849354 atcctttattgtttagatggcataaggttcaggccttgaaaattgacaatgttaggttggcattagactcggctatggatgat 19849436  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 116 - 189
Target Start/End: Complemental strand, 20015959 - 20015886
Alignment:
Q  116 cctttattgtttagatggcataaggttcaggccttgaaaattgacaatgttaggttggtcttagactcagctat 189  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||||||| | |||  ||||||||||||||    
T  20015959 cctttattgtttaggtggcataaggttcaggctttgaaaattgacaatgttatggtggcattagactcagctat 20015886  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 116 - 202
Target Start/End: Original strand, 19858429 - 19858515
Alignment:
Q  116 cctttattgtttagatggcataaggttcaggccttgaaaattgacaatgttaggttggtcttagactcagctatgaatgatattatt 202  Q
    |||||||||||||| |||||||||||| ||||||||||| |||||||||||| |||||  |||||||| |||||  ||||| |||||    
T  19858429 cctttattgtttaggtggcataaggttaaggccttgaaagttgacaatgttaagttggcattagactcggctattgatgattttatt 19858515  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 24 - 95
Target Start/End: Original strand, 19848795 - 19848866
Alignment:
Q  24 acctttgtgtttccctttggtgaggcaacacttactttggaggatatcatggttttaggtggtgatcctgtt 95  Q
    |||||||||||| |||||||||| |||||| | ||||||||||||||||||||| |||| ||| ||||||||    
T  19848795 acctttgtgttttcctttggtgaagcaacaatcactttggaggatatcatggttctagggggttatcctgtt 19848866  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 184
Target Start/End: Original strand, 20046480 - 20046548
Alignment:
Q  116 cctttattgtttagatggcataaggttcaggccttgaaaattgacaatgttaggttggtcttagactca 184  Q
    |||||||||||||| |||||||||||||| || ||||||||||| ||||||| |||||  |||||||||    
T  20046480 cctttattgtttaggtggcataaggttcacgcattgaaaattgataatgttaagttggcattagactca 20046548  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 116 - 167
Target Start/End: Original strand, 17115073 - 17115124
Alignment:
Q  116 cctttattgtttagatggcataaggttcaggccttgaaaattgacaatgtta 167  Q
    |||||||||||||| ||||||| |||||||||| ||||||||||||||||||    
T  17115073 cctttattgtttaggtggcatagggttcaggccgtgaaaattgacaatgtta 17115124  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 120 - 202
Target Start/End: Original strand, 19944078 - 19944160
Alignment:
Q  120 tattgtttagatggcataaggttcaggccttgaaaattgacaatgttaggttggtcttagactcagctatgaatgatattatt 202  Q
    ||||||| || |||||||| ||| ||||||||||||||||||||||  ||||||  ||||| |||||||| |||||| |||||    
T  19944078 tattgttgaggtggcataatgttaaggccttgaaaattgacaatgtggggttggcattagattcagctatcaatgattttatt 19944160  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 24839731 - 24839666
Alignment:
Q  120 tattgtttagatggcataaggttcaggccttgaaaattgacaatgttaggttggtcttagactcag 185  Q
    ||||||| || |||||||| ||| |||||||||||||||||||||| |||||||  ||||||||||    
T  24839731 tattgttgaggtggcataatgttaaggccttgaaaattgacaatgtgaggttggcattagactcag 24839666  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 188
Target Start/End: Original strand, 19818920 - 19818992
Alignment:
Q  116 cctttattgtttagatggcataaggttcaggccttgaaaattgacaatgttaggttggtcttagactcagcta 188  Q
    ||||| |||||||| |||||| | |||||||||||| ||||||||||||||||| |||  |||||||| ||||    
T  19818920 ccttttttgtttaggtggcatgatgttcaggccttggaaattgacaatgttaggatggcattagactcggcta 19818992  T

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Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 111 - 195
Target Start/End: Original strand, 19956439 - 19956523
Alignment:
Q  111 ggaatcctttattgtttagatggcataaggttcaggccttgaaaattgacaatgttaggttggtcttagactcagctatgaatga 195  Q
    |||| ||||| |||||||| |||||||||||| || |||||| | |||||||||||||| |||  |||||||| |||||| ||||    
T  19956439 ggaacccttttttgtttaggtggcataaggttaagcccttgatagttgacaatgttaggatggcattagactcggctatggatga 19956523  T

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Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 20036913 - 20036845
Alignment:
Q  27 tttgtgtttccctttggtgaggcaacacttactttggaggatatcatggttttaggtggtgatcctgtt 95  Q
    ||||||||| |||||||||| |||||| | | ||||||||||||||||||| |||| ||| ||||||||    
T  20036913 tttgtgttttcctttggtgaagcaacagtcattttggaggatatcatggttctaggaggttatcctgtt 20036845  T

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Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 26646818 - 26646886
Alignment:
Q  24 acctttgtgtttccctttggtgaggcaacacttactttggaggatatcatggttttaggtggtgatcct 92  Q
    ||||||||| || |||||||||| |||||  ||||||||||||||||||||||||| || ||| |||||    
T  26646818 acctttgtgattgcctttggtgaagcaactattactttggaggatatcatggttttggggggttatcct 26646886  T

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Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 20005298 - 20005219
Alignment:
Q  21 aacacctttgtgtttccctttggtgaggcaacacttactttggaggatatcatggttttaggtggtgatcctgttttcac 100  Q
    ||||||||||||||||  |||||||| |||||| | |||||||| ||| |||| ||||| || ||| |||||||||||||    
T  20005298 aacacctttgtgtttctatttggtgaagcaacaatcactttggaagatgtcattgttttggggggttatcctgttttcac 20005219  T

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Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 195
Target Start/End: Complemental strand, 20036361 - 20036282
Alignment:
Q  116 cctttattgtttagatggcataaggttcaggccttgaaaattgacaatgttaggttggtcttagactcagctatgaatga 195  Q
    ||||| |||||||| |||||||||||| || ||||||  ||||||||||||||| |||  |||||||| |||||| ||||    
T  20036361 ccttttttgtttaggtggcataaggttaagcccttgatgattgacaatgttaggatggcattagactcggctatggatga 20036282  T

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Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 182
Target Start/End: Original strand, 19832235 - 19832295
Alignment:
Q  122 ttgtttagatggcataaggttcaggccttgaaaattgacaatgttaggttggtcttagact 182  Q
    |||||||| |||||||||||| ||||||||  |||||||||||||||| |||  |||||||    
T  19832235 ttgtttaggtggcataaggttaaggccttggtaattgacaatgttaggatggcattagact 19832295  T

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Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 19838195 - 19838247
Alignment:
Q  27 tttgtgtttccctttggtgaggcaacacttactttggaggatatcatggtttt 79  Q
    ||||||||||| ||||||||||||||| | |||||||| ||| ||||||||||    
T  19838195 tttgtgtttccatttggtgaggcaacaatcactttggaagatgtcatggtttt 19838247  T

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Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 19955886 - 19955938
Alignment:
Q  27 tttgtgtttccctttggtgaggcaacacttactttggaggatatcatggtttt 79  Q
    ||||||||||| ||||||||||||||| | |||||||| ||| ||||||||||    
T  19955886 tttgtgtttccatttggtgaggcaacaatcactttggaagatgtcatggtttt 19955938  T

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Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 19818362 - 19818433
Alignment:
Q  21 aacacctttgtgtttccctttggtgaggcaacacttactttggaggatatcatggttttaggtggtgatcct 92  Q
    ||||||||||| ||||| ||||||||||||||  | |||||||||||| |||| ||||| || ||| |||||    
T  19818362 aacacctttgtttttccatttggtgaggcaactatcactttggaggatgtcatagttttggggggttatcct 19818433  T

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Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 19812085 - 19812143
Alignment:
Q  21 aacacctttgtgtttccctttggtgaggcaacacttactttggaggatatcatggtttt 79  Q
    ||||||||||| ||||| |||||||| |||||  | |||||||||||||| ||||||||    
T  19812085 aacacctttgtttttccatttggtgaagcaactatcactttggaggatattatggtttt 19812143  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 26651843 - 26651896
Alignment:
Q  26 ctttgtgtttccctttggtgaggcaacacttactttggaggatatcatggtttt 79  Q
    |||||| ||||| ||||||||||||||| | |||||||||||| |||| |||||    
T  26651843 ctttgtttttccttttggtgaggcaacaatcactttggaggatgtcattgtttt 26651896  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 19950935 - 19950987
Alignment:
Q  27 tttgtgtttccctttggtgaggcaacacttactttggaggatatcatggtttt 79  Q
    ||||||||||| ||||||||||||||  | |||||||||||| | ||||||||    
T  19950935 tttgtgtttccatttggtgaggcaactatcactttggaggatgttatggtttt 19950987  T

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Target: chr5 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 116 - 196
Target Start/End: Original strand, 9815394 - 9815474
Alignment:
Q  116 cctttattgtttagatggcataaggttcaggccttgaaaattgacaatgttaggttggtcttagactcagctatgaatgat 196  Q
    |||||||||||||| || |||||||||||||||||||||||||||||||||| | |||  |||||||| |||||| |||||    
T  9815394 cctttattgtttaggtgacataaggttcaggccttgaaaattgacaatgttaagctggcattagactcggctatggatgat 9815474  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 196
Target Start/End: Complemental strand, 26354685 - 26354605
Alignment:
Q  116 cctttattgtttagatggcataaggttcaggccttgaaaattgacaatgttaggttggtcttagactcagctatgaatgat 196  Q
    |||||||||||||||||||||| ||| || |||||||||||||||||||||| | |||  |||||||  ||||| ||||||    
T  26354685 cctttattgtttagatggcatagggtacaagccttgaaaattgacaatgttaagctggaattagacttggctatcaatgat 26354605  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 108
Target Start/End: Complemental strand, 22685912 - 22685874
Alignment:
Q  70 tcatggttttaggtggtgatcctgttttcacttcacttc 108  Q
    |||||||||||||||||||||||||||||||||||||||    
T  22685912 tcatggttttaggtggtgatcctgttttcacttcacttc 22685874  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 167
Target Start/End: Original strand, 12497567 - 12497616
Alignment:
Q  118 tttattgtttagatggcataaggttcaggccttgaaaattgacaatgtta 167  Q
    ||||||||| || ||||||||||||| |||||||||||||| ||||||||    
T  12497567 tttattgttgaggtggcataaggttctggccttgaaaattggcaatgtta 12497616  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 167
Target Start/End: Original strand, 12521432 - 12521481
Alignment:
Q  118 tttattgtttagatggcataaggttcaggccttgaaaattgacaatgtta 167  Q
    ||||||||| || ||||||||||||| |||||||||||||| ||||||||    
T  12521432 tttattgttgaggtggcataaggttctggccttgaaaattggcaatgtta 12521481  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 184
Target Start/End: Complemental strand, 12579849 - 12579781
Alignment:
Q  116 cctttattgtttagatggcataaggttcaggccttgaaaattgacaatgttaggttggtcttagactca 184  Q
    ||||||||| |||| | | ||||||||||||||||| ||||||||||||||| ||| |  |||||||||    
T  12579849 cctttattgcttaggttgaataaggttcaggccttgcaaattgacaatgttaagtttgcattagactca 12579781  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 184
Target Start/End: Complemental strand, 12519553 - 12519486
Alignment:
Q  117 ctttattgtttagatggcataaggttcaggccttgaaaattgacaatgttaggttggtcttagactca 184  Q
    |||||||| |||| | | ||||||||||||||||| ||||||||||||||| ||| |  |||||||||    
T  12519553 ctttattgcttaggttgaataaggttcaggccttgcaaattgacaatgttaagtttgcattagactca 12519486  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 12495753 - 12495703
Alignment:
Q  116 cctttattgtttagatggcataaggttcaggccttgaaaattgacaatgtt 166  Q
    ||||||||| |||| | | ||||||||||||||||| ||||||||||||||    
T  12495753 cctttattgcttaggttgaataaggttcaggccttgcaaattgacaatgtt 12495703  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 173
Target Start/End: Complemental strand, 6397497 - 6397440
Alignment:
Q  116 cctttattgtttagatggcataaggttcaggccttgaaaattgacaatgttaggttgg 173  Q
    |||||||| ||||| ||| |||||||||||||||| |||||||||||| ||| |||||    
T  6397497 cctttattttttaggtggtataaggttcaggcctttaaaattgacaatattaagttgg 6397440  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 6398039 - 6397999
Alignment:
Q  33 tttccctttggtgaggcaacacttactttggaggatatcat 73  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  6398039 tttccctttggtgaggcaacaataactttggaggatatcat 6397999  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 6398078 - 6398118
Alignment:
Q  33 tttccctttggtgaggcaacacttactttggaggatatcat 73  Q
    ||||||||||||||||||||| | |||||| ||||||||||    
T  6398078 tttccctttggtgaggcaacaataactttgaaggatatcat 6398118  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 1717025 - 1717080
Alignment:
Q  27 tttgtgtttccctttggtgaggcaacacttactttggaggatatcatggttttagg 82  Q
    ||||||||||| |||||||| || ||| | |||||||||||||| |||||||||||    
T  1717025 tttgtgtttccttttggtgaagccacaatcactttggaggatattatggttttagg 1717080  T

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