View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6873A_low_173 (Length: 216)
Name: NF6873A_low_173
Description: NF6873A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6873A_low_173 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 5e-95; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 22 - 205
Target Start/End: Complemental strand, 3686147 - 3685964
Alignment:
| Q |
22 |
tttctagtactgctatttatcaagaacacacctcatagcgatcttcccgaatcgatacgtgtggtaattataaaggaagaagttgtgtatagttcatgaa |
121 |
Q |
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| T |
3686147 |
tttctagtactgctatttatcaagaacacacctcataacgatcttcccgaatcgatacgtgtggtaattataaaggaagaagttgtgtatagttcatgaa |
3686048 |
T |
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| Q |
122 |
tgagcggaaatcacagtgtgtatgtgttataagaaccaatcacttactgccacatcagttcgcgatgcgttcgtgatctatatt |
205 |
Q |
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| T |
3686047 |
tgagcggaaatcacagtgtgtatgtgttaaaagaaccaatcacttactgccacatcagttcgcgatgcgttcgtgatctatatt |
3685964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 20 - 205
Target Start/End: Complemental strand, 3693916 - 3693730
Alignment:
| Q |
20 |
tatttctagtactgctatttatcaagaacacacctcatagcgatcttcccgaatcgatacgtgtggtaattataaaggaagaagttgtgtatagttcatg |
119 |
Q |
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|||||||||||||| | |||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||| | |
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| T |
3693916 |
tatttctagtactgttgtttatcaaaaacacacctcatcatgatcttcccgaatcgatacgtgttgtaattataaaggaagaagcagtgtatggttcagg |
3693817 |
T |
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| Q |
120 |
aatgagcggaaatcacagtgtgtatgtgttataag-aaccaatcacttactgccacatcagttcgcgatgcgttcgtgatctatatt |
205 |
Q |
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| T |
3693816 |
aatgagcggaaatcacagtgtgtatgtgttataagaaaccaatcacttactgccaaatcagttcgtgatgcgttattgatcaatatt |
3693730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 21 - 192
Target Start/End: Complemental strand, 3679391 - 3679213
Alignment:
| Q |
21 |
atttctagtactgctatttatcaagaacacacctcatagcgatcttcccgaatcgatac---gt----gtggtaattataaaggaagaagttgtgtatag |
113 |
Q |
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||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| || || |||||||| ||| ||||||| |||||||| |
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| T |
3679391 |
atttctagtactgctatttatcaagaacatgcctcatcacgatcttcccgaatcgatacaccgtacacgttgtaattattaag-aagaagtagtgtatag |
3679293 |
T |
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| Q |
114 |
ttcatgaatgagcggaaatcacagtgtgtatgtgttataag-aaccaatcacttactgccacatcagttcgcgatgcgtt |
192 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||| |||||||||||| |||||| |||| |||| |||||||| |
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| T |
3679292 |
ttcaggaatgagcggaaatcacagcgtgtatgtgttataagaaaccaatcacttgctgccaaatcaattcgtgatgcgtt |
3679213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 3675712 - 3675595
Alignment:
| Q |
20 |
tatttctagtactgctatttatcaagaacacacctcatagcgatcttcccgaatcgatacgtgtggtaattataaaggaagaagttgtgtatagttcatg |
119 |
Q |
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||||||||||||| |||||||||||||||||| |||| ||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||| | |
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| T |
3675712 |
tatttctagtactactatttatcaagaacacatctcaccatgatcttcccgaatcgattcgtgttgtaattataaaggaagaagcagtgtatagttctgg |
3675613 |
T |
|
| Q |
120 |
aatgagcggaaatcacag |
137 |
Q |
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||||||||||||| |||| |
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| T |
3675612 |
aatgagcggaaatgacag |
3675595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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