View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6873A_low_18 (Length: 404)
Name: NF6873A_low_18
Description: NF6873A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6873A_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 149 - 394
Target Start/End: Original strand, 8699769 - 8700015
Alignment:
| Q |
149 |
gggtatctttgtgcaaagtgtatagactaattccttaagtcgggtaaggcatcacaatgaatcacaaaactcttctagatttgaaatcaagacttgtagg |
248 |
Q |
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| T |
8699769 |
gggtatctctgtgcaaagtgtataaactaattccttaaatcgggtaaggcatcacaatgaattacaaaactcttctagatttgaaatcaagacctctagg |
8699868 |
T |
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| Q |
249 |
agattcctcaccatctcattaagtgttctaggatagaatagaaaatacttatttaaaac-nnnnnnnnnatcaagtaaaaactgcaataaaatttcaggt |
347 |
Q |
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| T |
8699869 |
agattcctcaccatctcattaagtattctaggatagaatagaaaatacttatttaaaacttttttttttatcaagtaaaaactgcaataaaatttcaaga |
8699968 |
T |
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| Q |
348 |
gctgcctgaaccgcttacaaagttaatccataatagttctagaataa |
394 |
Q |
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| T |
8699969 |
gctgcttgaaccgcttacaaacttaatccataatagttctagaataa |
8700015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 14382932 - 14382892
Alignment:
| Q |
258 |
accatctcattaagtgttctaggatagaatagaaaatactt |
298 |
Q |
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| T |
14382932 |
accatctctttaagtattttaggatagaatagaaaatactt |
14382892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 317 - 394
Target Start/End: Original strand, 52773527 - 52773604
Alignment:
| Q |
317 |
atcaagtaaaaactgcaataaaatttcaggtgctgcctgaaccgcttacaaagttaatccataatagttctagaataa |
394 |
Q |
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| T |
52773527 |
atcaagtaaaaactgcaataaaatttcaggagctgcctcaaccgcttacaaagttagtccgtaatagttctagaataa |
52773604 |
T |
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