View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6873A_low_186 (Length: 207)
Name: NF6873A_low_186
Description: NF6873A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6873A_low_186 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 4e-83; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 7839784 - 7839613
Alignment:
| Q |
17 |
atgaaagggaaaactgtttttgttatattttataaggtggaagcttctgatgttagacatcaaagaaggagctatgagattgcaatgattcaacatgaaa |
116 |
Q |
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| T |
7839784 |
atgaaagggaaaactgtttttgttatattttataaggtggaagcttctgatgttagacatcagagaaagagctatgaaattgcaatgattcaacatgaaa |
7839685 |
T |
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| Q |
117 |
agagatttggaaaggaatcggagaaggtgaagaaatggaggtctgctttggaaagagtttgtgctcttagtg |
188 |
Q |
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| T |
7839684 |
agagatttggaaaggaatcggagaaggtgaagaaatggaggtctgctttgaaaagagtttgtgctcttagtg |
7839613 |
T |
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Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 89 - 188
Target Start/End: Complemental strand, 7763043 - 7762944
Alignment:
| Q |
89 |
tatgagattgcaatgattcaacatgaaaagagatttggaaaggaatcggagaaggtgaagaaatggaggtctgctttggaaagagtttgtgctcttagtg |
188 |
Q |
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| T |
7763043 |
tatgaaattgcaatgatgaaacatgaaaatagatttggaaaggaatcggagaaggtgaaagcatggaggttggctttgaatcgtgtttgtgctctcagtg |
7762944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 188
Target Start/End: Complemental strand, 7755571 - 7755491
Alignment:
| Q |
108 |
aacatgaaaagagatttggaaaggaatcggagaaggtgaagaaatggaggtctgctttggaaagagtttgtgctcttagtg |
188 |
Q |
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| T |
7755571 |
aacatgaaaagagatttggaagggaatcggagaaggtgaaagcatggaagttggctttgaatcgagtttgtgctctcagtg |
7755491 |
T |
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