View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6873A_low_189 (Length: 206)
Name: NF6873A_low_189
Description: NF6873A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6873A_low_189 |
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Alignment Details
Target: chr6 (Bit Score: 134; Significance: 6e-70; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 30757840 - 30757673
Alignment:
| Q |
19 |
gttgttctctcagcttcttgattttgcagagtatttttcatttggaacttttgaattttgattattatatactttagttttggattaattagttgatgat |
118 |
Q |
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| T |
30757840 |
gttgttctctcagcttcttgattttgcagagtttttttcatttagaacttttgaattttgattattatatactttagttttggattaattagttgatgat |
30757741 |
T |
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| Q |
119 |
tttgaaaagaaatataaaagtactgattttga---gttggatgtgaaatttggaattttgttgttgtt |
183 |
Q |
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| T |
30757740 |
tttgaaaagaaatataaaaatactgattttgaatgtttggatgtgaagtttggaattttgttgttgtt |
30757673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 25 - 152
Target Start/End: Original strand, 18192582 - 18192713
Alignment:
| Q |
25 |
ctctcagcttcttgattttgcagagtatttttcatttggaacttttgaattttgattattatatactttag-ttttggattaattagttgatgattttga |
123 |
Q |
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|||| ||| ||||||||||| ||||| ||||||||| |||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||| |
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| T |
18192582 |
ctctaagcctcttgattttgtagagttcttttcatttagaacttttgaattttgattattatatgctttagtttttggatcaattagttgatgattttga |
18192681 |
T |
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| Q |
124 |
a---aagaaatataaaagtactgattttgagt |
152 |
Q |
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| T |
18192682 |
aaagaagaaatataaaagtactgattttgagt |
18192713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 152
Target Start/End: Original strand, 31856771 - 31856876
Alignment:
| Q |
52 |
tttttcatttggaacttttgaattttgattattatatactttagttttggattaattagttgatgattttga-----aaagaaatataaaagtactgatt |
146 |
Q |
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| T |
31856771 |
tttttcatttagaattttgggttttttattattatatgatttagttttagatcaattaattaatgattttgaaaaggaaagaaatataaaagtatagatt |
31856870 |
T |
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| Q |
147 |
ttgagt |
152 |
Q |
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| T |
31856871 |
ttgagt |
31856876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 25 - 183
Target Start/End: Original strand, 36164153 - 36164319
Alignment:
| Q |
25 |
ctctcagcttcttgattttgcagagtatttttcatttggaacttttgaattttgattattatatactttag-ttttggattaattagttgatgattttga |
123 |
Q |
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| T |
36164153 |
ctctcagcttcttgattttgtagacttcttttcatttagaacttttgaattttgattattatatgctttagtttttggatcaattagttgatgattttga |
36164252 |
T |
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| Q |
124 |
----aaagaaatataaaagtactgattttgag---ttggatgtgaaatttggaattttgttgttgtt |
183 |
Q |
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| T |
36164253 |
aaagaaagaaatataaaagtactgattttgagtgtttgaaagtgaaatttgggattttgttgttgtt |
36164319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 25 - 99
Target Start/End: Complemental strand, 32564945 - 32564871
Alignment:
| Q |
25 |
ctctcagcttcttgattttgcagagtatttttcatttggaacttttgaattttgattattatatactttagtttt |
99 |
Q |
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|||| ||||||||||||||| ||||| ||||||||| ||| |||||||||||||||||||||| |||||||||| |
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| T |
32564945 |
ctctaagcttcttgattttgtagagttcttttcatttagaaattttgaattttgattattatatgctttagtttt |
32564871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 62 - 127
Target Start/End: Original strand, 5225249 - 5225314
Alignment:
| Q |
62 |
ggaacttttgaattttgattattatatactttagttttggattaattagttgatgattttgaaaag |
127 |
Q |
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| T |
5225249 |
ggaacttttggattttgattattatatgttatagttttggattaattagttgatagttttgaaaag |
5225314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 127
Target Start/End: Original strand, 4754654 - 4754719
Alignment:
| Q |
58 |
atttggaacttttgaattttgattattatatactttagttttggattaattagttgatgattttgaaaag |
127 |
Q |
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| T |
4754654 |
atttggaacttttgaattttgatt----tatgttttagttttggattaattggttgatggttttgaaaag |
4754719 |
T |
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