View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6873A_low_194 (Length: 204)
Name: NF6873A_low_194
Description: NF6873A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6873A_low_194 |
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Alignment Details
Target: chr6 (Bit Score: 151; Significance: 4e-80; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 22 - 184
Target Start/End: Complemental strand, 10706792 - 10706630
Alignment:
| Q |
22 |
tcatgcaaggtcttaaggataatgctgcaaacctgcacggatcatcgattattggaggagcaccccgtctccaattgcggttgtcatctgttgctccacc |
121 |
Q |
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| T |
10706792 |
tcatgcaaggtcttaaggataatgctgcaaacctgcacggatcatcgataattggaggagcaccccgtctccaattgcggttgtcatctgttgctccacc |
10706693 |
T |
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| Q |
122 |
tcctttgtgtaagaatgtaatgccaaatggcccaaatctgagcgcacttaattctgacaattc |
184 |
Q |
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| T |
10706692 |
tcctttgtgtaagaatgtaatgccaaatggcccaaatctgagcacacttgattctgacaattc |
10706630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 96 - 184
Target Start/End: Original strand, 6387473 - 6387561
Alignment:
| Q |
96 |
ttgcggttgtcatctgttgctccacctcctttgtgtaagaatgtaatgccaaatggcccaaatctgagcgcacttaattctgacaattc |
184 |
Q |
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| T |
6387473 |
ttgcagttgtcatctgttgctccaccccctttgtgtaggaatgtaatgccaaatggcccaaatctgagcacacttaattctgacaattc |
6387561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 6387101 - 6387161
Alignment:
| Q |
22 |
tcatgcaaggtcttaaggataatgctgcaaacctgcacggatcatcgattattggaggagc |
82 |
Q |
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| T |
6387101 |
tcatgcaaggtcttaaggatattgctgcaaaccctcacggatcatctataattggaggagc |
6387161 |
T |
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