View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6873A_low_22 (Length: 376)

Name: NF6873A_low_22
Description: NF6873A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6873A_low_22
NF6873A_low_22
[»] chr7 (17 HSPs)
chr7 (1-194)||(35939423-35939622)
chr7 (2-216)||(35982105-35982319)
chr7 (2-216)||(36003517-36003731)
chr7 (18-252)||(36221333-36221573)
chr7 (17-354)||(36225993-36226336)
chr7 (2-172)||(35955131-35955301)
chr7 (2-209)||(35958082-35958295)
chr7 (49-170)||(36217436-36217557)
chr7 (32-196)||(35946907-35947077)
chr7 (38-174)||(35977573-35977709)
chr7 (38-174)||(35998985-35999121)
chr7 (1-150)||(35965591-35965738)
chr7 (145-276)||(35973540-35973677)
chr7 (145-276)||(35994952-35995089)
chr7 (80-169)||(29602916-29603005)
chr7 (80-169)||(29750289-29750378)
chr7 (80-151)||(29743270-29743341)
[»] chr1 (2 HSPs)
chr1 (2-375)||(18125790-18126169)
chr1 (1-131)||(18118145-18118275)
[»] chr4 (2 HSPs)
chr4 (38-151)||(49340545-49340658)
chr4 (38-151)||(49351909-49352022)
[»] chr5 (1 HSPs)
chr5 (80-151)||(32784295-32784366)
[»] chr2 (1 HSPs)
chr2 (2-62)||(26328574-26328634)


Alignment Details
Target: chr7 (Bit Score: 173; Significance: 6e-93; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 35939423 - 35939622
Alignment:
Q  1 tattttaataattatctgcctgatatcaaactcattggagacacacagccacatcttcaattggaaaagttgattcaccctcttatcattgaacaccaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35939423 tattttaataattatctgcctgatatcaaactcattggagacacacaaccacatcttcaattggaaaagttgattcaccctcttatcattgaacaccaac 35939522  T
Q  101 tttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataacacataaactttt------atcaccatcaccgtgaggatgtggttgcatca 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||    
T  35939523 tttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataacacataaacttttatcaccatcaccatcaccgtgaggatgtggttgcatca 35939622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 2 - 216
Target Start/End: Original strand, 35982105 - 35982319
Alignment:
Q  2 attttaataattatctgcctgatatcaaactcattggagacacacagccacatcttcaattggaaaagttgattcaccctcttatcattgaacaccaact 101  Q
    |||||||| ||||||| | |||||||||| ||||  ||||| |||| ||||||| |||| |  |||  ||| | || ||||| ||||||||| ||||| |    
T  35982105 attttaatgattatcttcttgatatcaaaatcatcagagacgcacacccacatcctcaacttaaaagattggtccatcctctcatcattgaaaaccaatt 35982204  T
Q  102 ttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataacacataaacttttatcaccatcaccgtgaggatgtggttgcatcaaacgctt 201  Q
    |||||||||| ||||| || || |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||| ||||    
T  35982205 ttgcaagtgtagtctttcccaaacctccaattcccacaatgggaataacacataagcttttatcaccatcaccttgaggatgtggtagcatcaaaagctt 35982304  T
Q  202 gataatttcttccct 216  Q
    ||||||||| |||||    
T  35982305 gataatttcatccct 35982319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 2 - 216
Target Start/End: Original strand, 36003517 - 36003731
Alignment:
Q  2 attttaataattatctgcctgatatcaaactcattggagacacacagccacatcttcaattggaaaagttgattcaccctcttatcattgaacaccaact 101  Q
    |||||||| ||||||| | |||||||||| ||||  ||||| |||| ||||||| |||| |  |||  ||| | || ||||| ||||||||| ||||| |    
T  36003517 attttaatgattatcttcttgatatcaaaatcatcagagacgcacacccacatcctcaacttaaaagattggtccatcctctcatcattgaaaaccaatt 36003616  T
Q  102 ttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataacacataaacttttatcaccatcaccgtgaggatgtggttgcatcaaacgctt 201  Q
    |||||||||| ||||| || || |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||| ||||    
T  36003617 ttgcaagtgtagtctttcccaaacctccaattcccacaatgggaataacacataagcttttatcaccatcaccttgaggatgtggtagcatcaaaagctt 36003716  T
Q  202 gataatttcttccct 216  Q
    ||||||||| |||||    
T  36003717 gataatttcatccct 36003731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 36221573 - 36221333
Alignment:
Q  18 gcctgatatcaaactcattggagacacacagccacatcttcaattggaaaagttgattcaccctcttatcattgaacaccaactttgcaagtgtggtctt 117  Q
    |||| |||||||| |||||||||||||||| ||| ||||||||||||||||  | ||  | |||||||||||||||||||||| ||||||||||||||||    
T  36221573 gcctaatatcaaaatcattggagacacacacccaaatcttcaattggaaaatatcatctatcctcttatcattgaacaccaaccttgcaagtgtggtctt 36221474  T
Q  118 ccctaatcctccaattcccacaatgggaataacacataaactttt------atcaccatcaccgtgaggatgtggttgcatcaaacgcttgataatttct 211  Q
    ||| || || |||||||| || |||||||||||||| ||| ||||      ||| ||||| || |||||||| |||||||||||| | ||||||||||||    
T  36221473 ccccaagccaccaattccaactatgggaataacacacaaatttttgtcaccatctccatctccatgaggatgcggttgcatcaaaagtttgataatttct 36221374  T
Q  212 tccctgtcacactctctcccgattacacttgaagcgtcaac 252  Q
    |||||||||  ||| ||||| || ||||||||||| |||||    
T  36221373 tccctgtcattctccctcccaataacacttgaagcatcaac 36221333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 17 - 354
Target Start/End: Original strand, 36225993 - 36226336
Alignment:
Q  17 tgcctgatatcaaactcattggagacacacagccacatcttcaattggaaaagttgattcaccctcttatcattgaacaccaactttgcaagtgtggtct 116  Q
    ||||| |||||||| ||||  |||| ||||| ||||||||||||||||||||| | ||  ||||||||||| ||||||||||| ||||||||||||||||    
T  36225993 tgcctaatatcaaaatcatcagagatacacacccacatcttcaattggaaaagatcatcaaccctcttatcgttgaacaccaattttgcaagtgtggtct 36226092  T
Q  117 tccctaatcctccaattcccacaatgggaataacacataaacttttatcac------catcaccgtgaggatgtggttgcatcaaacgcttgataatttc 210  Q
    |||| || || ||||||||||| |||||||||||||| |||||||||||||      ||||||| ||||||||||| ||||||||| |||||||||| ||    
T  36226093 tccccaagccaccaattcccactatgggaataacacacaaacttttatcaccatcagcatcaccttgaggatgtggctgcatcaaaagcttgataatatc 36226192  T
Q  211 ttccctgtcacactctctcccgattacacttgaagcgtcaacattgggataagtcatttctctcctttggactacatgtccgggatcaacattgatggtt 310  Q
     | ||| |||  ||| || || || |||  |||||| ||||| | || || ||||||||||||| | || ||  || ||||   ||||||| | || | |    
T  36226193 attcctctcattctcccttcctatcacatctgaagcatcaacgtgggaatgagtcatttctctcttctgcacagcaagtcctaaatcaacactaattgct 36226292  T
Q  311 gccagtccaaacttgttcccatcagatgctaccttattcaatct 354  Q
    || ||||||||| |  ||||||||| ||| ||||||||||||||    
T  36226293 gcaagtccaaacctagtcccatcagctgccaccttattcaatct 36226336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 2 - 172
Target Start/End: Original strand, 35955131 - 35955301
Alignment:
Q  2 attttaataattatctgcctgatatcaaactcattggagacacacagccacatcttcaattggaaaagttgattcaccctcttatcattgaacaccaact 101  Q
    |||||||| |||||||||||||| ||||| |  || |||||| ||| |||||||||||||| ||||| ||||| |||||| | |||||||||||| ||||    
T  35955131 attttaatgattatctgcctgatgtcaaaattgttagagacaaacacccacatcttcaatttgaaaatttgatccaccctttcatcattgaacactaact 35955230  T
Q  102 ttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataacacataaacttttatcaccatca 172  Q
    |||||||||||||||| || ||||||||||| || |  |||||||||||||| ||||||||||| ||||||    
T  35955231 ttgcaagtgtggtctttcccaatcctccaatacctattatgggaataacacacaaacttttatctccatca 35955301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 2 - 209
Target Start/End: Original strand, 35958082 - 35958295
Alignment:
Q  2 attttaataattatctgcctgatatcaaactcattggagacacacagccacatcttcaattggaaaagttgattcaccctcttatcattgaacaccaact 101  Q
    |||||||| |||||||  ||||| || || |||| ||||| ||||| |||||||||||| ||||||||||||| || ||||||||||||||||||| |||    
T  35958082 attttaatgattatctttctgatgtcgaaatcatcggagatacacacccacatcttcaactggaaaagttgatccatcctcttatcattgaacaccgact 35958181  T
Q  102 ttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataacacataaacttttatcaccatca------ccgtgaggatgtggttgcatcaa 195  Q
    |||||||||| ||||| || || |||||||||||||| || ||||| ||||| | ||| ||||||||||||      ||| |||||||||| ||||||||    
T  35958182 ttgcaagtgttgtctttcccaaacctccaattcccactattggaatgacacagagactattatcaccatcaccatctccgcgaggatgtggctgcatcaa 35958281  T
Q  196 acgcttgataattt 209  Q
    | | ||||||||||    
T  35958282 aagattgataattt 35958295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 49 - 170
Target Start/End: Complemental strand, 36217557 - 36217436
Alignment:
Q  49 ccacatcttcaattggaaaagttgattcaccctcttatcattgaacaccaactttgcaagtgtggtcttccctaatcctccaattcccacaatgggaata 148  Q
    ||||||||||||||| |||| || ||  | ||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||    
T  36217557 ccacatcttcaattgaaaaacttcatctatcctcttatcattgtacaccaattttgcaagtgtggtcttccccaatcctccaattcccactatgggaata 36217458  T
Q  149 acacataaacttttatcaccat 170  Q
    |||||||||||| ||| |||||    
T  36217457 acacataaacttctatgaccat 36217436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 32 - 196
Target Start/End: Original strand, 35946907 - 35947077
Alignment:
Q  32 tcattggagacacacagccacatcttcaattggaaaagttgattcaccctcttatcattgaacaccaactttgcaagtgtggtcttccctaatcctccaa 131  Q
    |||| ||||| ||||| |||||||||||| |||||||||||||  | ||||||||||||||||||| |||| ||||||||||||||||  || |||||||    
T  35946907 tcatcggagatacacacccacatcttcaactggaaaagttgatgtatcctcttatcattgaacaccgacttcgcaagtgtggtcttccacaaacctccaa 35947006  T
Q  132 ttcccacaatgggaataacacataaacttttatcaccatca------ccgtgaggatgtggttgcatcaaa 196  Q
    ||||||| || ||||| ||||| | ||| ||||||||||||      |||||||||||||| |||||||||    
T  35947007 ttcccactattggaatgacacagagactattatcaccatcaccatcgccgtgaggatgtggctgcatcaaa 35947077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 38 - 174
Target Start/End: Original strand, 35977573 - 35977709
Alignment:
Q  38 gagacacacagccacatcttcaattggaaaagttgattcaccctcttatcattgaacaccaactttgcaagtgtggtcttccctaatcctccaattccca 137  Q
    |||| ||||| |||||||||||| ||||||||||||| || ||||||||||||||||||| |||||||||  ||||||||||| || |||||||||||||    
T  35977573 gagatacacacccacatcttcaactggaaaagttgatccatcctcttatcattgaacaccgactttgcaatggtggtcttccccaaacctccaattccca 35977672  T
Q  138 caatgggaataacacataaacttttatcaccatcacc 174  Q
    | || ||||| ||||| | ||| ||||||||| ||||    
T  35977673 ctattggaatgacacaaagactattatcaccaccacc 35977709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 38 - 174
Target Start/End: Original strand, 35998985 - 35999121
Alignment:
Q  38 gagacacacagccacatcttcaattggaaaagttgattcaccctcttatcattgaacaccaactttgcaagtgtggtcttccctaatcctccaattccca 137  Q
    |||| ||||| |||||||||||| ||||||||||||| || ||||||||||||||||||| |||||||||  ||||||||||| || |||||||||||||    
T  35998985 gagatacacacccacatcttcaactggaaaagttgatccatcctcttatcattgaacaccgactttgcaatggtggtcttccccaaacctccaattccca 35999084  T
Q  138 caatgggaataacacataaacttttatcaccatcacc 174  Q
    | || ||||| ||||| | ||| ||||||||| ||||    
T  35999085 ctattggaatgacacaaagactattatcaccaccacc 35999121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 35965591 - 35965738
Alignment:
Q  1 tattttaataattatctgcctgatatcaaactcattggagacacacagccacatcttcaattggaaaagttgattcaccctcttatcattgaacaccaac 100  Q
    |||||| |||||||| || ||||| ||||| ||||  ||||||||   ||| ||||||||    |||||| ||| |||| |||||||||||||||||||     
T  35965591 tatttttataattatttgtctgatgtcaaaatcat--gagacacaagcccatatcttcaacccaaaaagtcgatccaccatcttatcattgaacaccaag 35965688  T
Q  101 tttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataac 150  Q
    |||||||||||||||||||| || || |||||||| |  |||||||||||    
T  35965689 tttgcaagtgtggtcttccccaagccaccaattcctagtatgggaataac 35965738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 145 - 276
Target Start/End: Original strand, 35973540 - 35973677
Alignment:
Q  145 aataacacataaacttttatcacc------atcaccgtgaggatgtggttgcatcaaacgcttgataatttcttccctgtcacactctctcccgattaca 238  Q
    ||||||||| ||||||||||||||      |||||| |||||| |||||||||||| | ||||||||||||||||||| |||  ||| ||||| || |||    
T  35973540 aataacacacaaacttttatcaccgtctccatcaccttgaggacgtggttgcatcagaagcttgataatttcttccctatcattctccctcccaataaca 35973639  T
Q  239 cttgaagcgtcaacattgggataagtcatttctctcct 276  Q
    |||||||| || |||| || || ||||| |||||||||    
T  35973640 cttgaagcatcgacatgggaattagtcaattctctcct 35973677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 145 - 276
Target Start/End: Original strand, 35994952 - 35995089
Alignment:
Q  145 aataacacataaacttttatcacc------atcaccgtgaggatgtggttgcatcaaacgcttgataatttcttccctgtcacactctctcccgattaca 238  Q
    ||||||||| ||||||||||||||      |||||| |||||| |||||||||||| | ||||||||||||||||||| |||  ||| ||||| || |||    
T  35994952 aataacacacaaacttttatcaccgtctccatcaccttgaggacgtggttgcatcagaagcttgataatttcttccctatcattctccctcccaataaca 35995051  T
Q  239 cttgaagcgtcaacattgggataagtcatttctctcct 276  Q
    |||||||| || |||| || || ||||| |||||||||    
T  35995052 cttgaagcatcgacatgggaattagtcaattctctcct 35995089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 80 - 169
Target Start/End: Original strand, 29602916 - 29603005
Alignment:
Q  80 ctcttatcattgaacaccaactttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataacacataaacttttatcacca 169  Q
    ||||||||||||||||||  |||||||||||| ||||| || || ||||||||||| ||||| ||||||||| | | |||||||| ||||    
T  29602916 ctcttatcattgaacaccgtctttgcaagtgtagtctttcccaagcctccaattccaacaataggaataacagagagacttttatgacca 29603005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 80 - 169
Target Start/End: Complemental strand, 29750378 - 29750289
Alignment:
Q  80 ctcttatcattgaacaccaactttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataacacataaacttttatcacca 169  Q
    ||||||||||||||||||  |||||||||||| ||||| || || ||||||||||| ||||| ||||||||| | | |||||||| ||||    
T  29750378 ctcttatcattgaacaccgtctttgcaagtgtagtctttcccaagcctccaattccaacaataggaataacagagagacttttatgacca 29750289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 151
Target Start/End: Complemental strand, 29743341 - 29743270
Alignment:
Q  80 ctcttatcattgaacaccaactttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataaca 151  Q
    |||||||||||||||||   ||||||||| || ||||| || || ||||||||||| ||||| |||||||||    
T  29743341 ctcttatcattgaacactgtctttgcaagcgtagtctttcccaagcctccaattccaacaataggaataaca 29743270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 6e-62; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 2 - 375
Target Start/End: Original strand, 18125790 - 18126169
Alignment:
Q  2 attttaataattatctgcctgatatcaaactcattggagacacacagccacatcttcaattggaaaagttgattcaccctcttatcattgaacaccaact 101  Q
    |||||||| ||||| |||||||| ||||| | ||  |||||||||| ||||||||||||||| || |||| ||  |  |||||||||||||| || | ||    
T  18125790 attttaatgattatttgcctgatgtcaaaattatcagagacacacacccacatcttcaattgaaagagttcatctattctcttatcattgaaaacaagct 18125889  T
Q  102 ttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataacacataaacttttatca------ccatcaccgtgaggatgtggttgcatcaa 195  Q
    |||| | |||||||||||| || || ||||||||||| |||||||||||| ||| ||||||||||      |||||||| |||||||||| |||||||||    
T  18125890 ttgccaatgtggtcttccccaagccaccaattcccaccatgggaataacagatagacttttatcaccatcaccatcaccatgaggatgtgcttgcatcaa 18125989  T
Q  196 acgcttgataatttcttccctgtcacactctctcccgattacacttgaagcgtcaacattgggataagtcatttctctcctttggactacatgtccggga 295  Q
    | |||||||||| |||||||| |||| |||||| || ||||||||  |||| |||||||  |||||||||||||| ||| |||| || |   ||| ||||    
T  18125990 aagcttgataatctcttccctatcactctctcttcctattacactcaaagcatcaacatcaggataagtcatttccctcttttgcacaatgagtctggga 18126089  T
Q  296 tcaacattgatggttgccagtccaaacttgttcccatcagatgctaccttattcaatctgctcctaatatcttcaatttg 375  Q
    |||||||| || ||||| |||||||||||  ||||||| | ||||||||||| ||||||   ||||||||||| ||||||    
T  18126090 tcaacattaatagttgcaagtccaaacttagtcccatcggttgctaccttatccaatctatccctaatatctttaatttg 18126169  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 18118145 - 18118275
Alignment:
Q  1 tattttaataattatctgcctgatatcaaactcattggagacacacagccacatcttcaattggaaaagttgattcaccctcttatcattgaacaccaac 100  Q
    |||||| |||||||| ||| | |||| ||| | |||||||||||| |  |||||||||||||| |||| || ||  | ||||||||| ||||| ||||||    
T  18118145 tattttgataattatgtgcataatataaaaataattggagacacagactcacatcttcaattgaaaaaattcatcgatcctcttatcgttgaataccaac 18118244  T
Q  101 tttgcaagtgtggtcttccctaatcctccaa 131  Q
    |||||||||||||||||||| ||||||||||    
T  18118245 tttgcaagtgtggtcttccccaatcctccaa 18118275  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 151
Target Start/End: Complemental strand, 49340658 - 49340545
Alignment:
Q  38 gagacacacagccacatcttcaattggaaaagt-tgattcaccctcttatcattgaacaccaactttgcaagtgtggtcttccctaatcctccaattccc 136  Q
    |||||||||| ||||||||||||| |||||||| | ||  |  ||||||||||| ||||| | |||||||||||| || || |||||||||||||||||     
T  49340658 gagacacacacccacatcttcaat-ggaaaagtctcatctaaactcttatcattaaacacgacctttgcaagtgtagtttttcctaatcctccaattcca 49340560  T
Q  137 acaatgggaataaca 151  Q
    ||||| |||||||||    
T  49340559 acaataggaataaca 49340545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 38 - 151
Target Start/End: Complemental strand, 49352022 - 49351909
Alignment:
Q  38 gagacacacagccacatcttcaattggaaaagt-tgattcaccctcttatcattgaacaccaactttgcaagtgtggtcttccctaatcctccaattccc 136  Q
    |||||||||| ||||||||||||| |||||||| | ||  |  ||||||||||| |||||   |||||||||||| ||||| |||||||||||||||||     
T  49352022 gagacacacacccacatcttcaat-ggaaaagtctcatctaaactcttatcattaaacactgcctttgcaagtgtagtctttcctaatcctccaattcca 49351924  T
Q  137 acaatgggaataaca 151  Q
    ||||  |||||||||    
T  49351923 acaacaggaataaca 49351909  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 151
Target Start/End: Original strand, 32784295 - 32784366
Alignment:
Q  80 ctcttatcattgaacaccaactttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataaca 151  Q
    ||||||||||| |||||   ||||| |||||| || || ||||||||||||||||| ||||| |||||||||    
T  32784295 ctcttatcattaaacactgcctttgaaagtgtagtttttcctaatcctccaattccaacaataggaataaca 32784366  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 26328634 - 26328574
Alignment:
Q  2 attttaataattatctgcctgatatcaaactcattggagacacacagccacatcttcaatt 62  Q
    |||||||||||||||||||| || ||||| ||||  || ||||||| |||||| |||||||    
T  26328634 attttaataattatctgcctaatgtcaaaatcatatgacacacacacccacattttcaatt 26328574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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