View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6873A_low_27 (Length: 360)
Name: NF6873A_low_27
Description: NF6873A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6873A_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 51961287 - 51960933
Alignment:
| Q |
1 |
atggttgttcaatgatgttatatcacacgtttgaatgttgtgactctatcactatagtactatgctcgagttgtaaataacaaaatccaaatccttgaga |
100 |
Q |
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| T |
51961287 |
atggttgttcaatgatgttatatcacatgtttgaatgttgtgactctatcactatagtactatgctcgagttgtaaataagaaaatccaaatccttgaga |
51961188 |
T |
|
| Q |
101 |
aagtaataaatttacatcattacaaaaggatcgatgt----tgttctgtcaataagaaagactctgcttaaattaaaggtgtagctttccatcctctcct |
196 |
Q |
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||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
51961187 |
aagtaataaatttacatcattacaaaaggatcgatgtacgttgctctatcaataagaaagactctggttaaattaaaggtgtagctttccatcctctcct |
51961088 |
T |
|
| Q |
197 |
agatcacggaagcagattctactcttttgtctcaaagtctaaatctattagacacataatttcgtcatatacaccgaagaagattcttcactttgagcaa |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51961087 |
agatcacggaagcagattctactcttttgtctcaaagtctaaatctattagacacataatttcgtcatatacaccgaagaagattcttcactttgagcaa |
51960988 |
T |
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| Q |
297 |
aaaccttcaacttcttgtttaagtgtcaatttctggtgacatgcaacagtgtagt |
351 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51960987 |
aaaccttcaacttcttgtttaagtgtcaatttctggtgacatgcaacagtgtagt |
51960933 |
T |
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