View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6873A_low_3 (Length: 530)
Name: NF6873A_low_3
Description: NF6873A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6873A_low_3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 6 - 530
Target Start/End: Original strand, 52242378 - 52242897
Alignment:
| Q |
6 |
tttggtgttgaacacccacttggagtttgagactgtgaatcttctcctccaaatatatcatcaaagaaatcttttccttttcttctcctcctaactccac |
105 |
Q |
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| T |
52242378 |
tttggtgttgaacacccacttggagtttgagactgtgaatcttctcctccaaatatatcatcaaaaaaatcttttccttttcttctcctcctagctccac |
52242477 |
T |
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| Q |
106 |
tatcctcaccaaacaccggtttctcgctctcaggcggaggaggccaactacaccaacccgtttcaccttcctctcctccactcaccgatgacctcctccg |
205 |
Q |
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| T |
52242478 |
tatcctcaccaaacactggtttctcgctctcaggcggaggaggccaactacaccaacccgtttcaccttcctctcctccactcaccgatgacctcctccg |
52242577 |
T |
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| Q |
206 |
cggcggtcccccaaacacatcattaaaatcaacgtctgatttcctctgtgatgtgctcggattgttactactctcatcttcatcatatcctaactgaata |
305 |
Q |
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| T |
52242578 |
cggtggtcccccaaacacatcattaaaatcaacgtctgatttcctctgtgatgtgctcggattgttactactctcatcttcatcatatcctaactgaata |
52242677 |
T |
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| Q |
306 |
ccctctcgttgttcagaataactataaaatctctccattcaaaatctggcgggaaattgttattgttatagcgaggaatggaacataacagaacagaaca |
405 |
Q |
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| T |
52242678 |
ccctctcgttgttcagaataactataaaatctctccattcaaaatctggcgggaaattgttattgttatagcgaggaatgg-----aatggaacagaaca |
52242772 |
T |
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| Q |
406 |
gaactgaactgaactgagaggtttgtgagaaagaacaatgatgtcagtgaagagaattttgaaatgataataatttgaattgtcaccgaggacagagtta |
505 |
Q |
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| T |
52242773 |
gaactgaactgaactgagaggtttgtgagaaagaacaatgatgtcagtgaagagaattttgaaataataataatttgaattgtcaccaaggacagagtta |
52242872 |
T |
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| Q |
506 |
ggtggcaatggaaatctagtagaaa |
530 |
Q |
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| T |
52242873 |
ggtggcactggaaatctagtagaaa |
52242897 |
T |
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