View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6873A_low_31 (Length: 354)

Name: NF6873A_low_31
Description: NF6873A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6873A_low_31
NF6873A_low_31
[»] chr4 (10 HSPs)
chr4 (179-334)||(37179999-37180154)
chr4 (179-334)||(37181583-37181738)
chr4 (179-334)||(37189700-37189855)
chr4 (183-334)||(37187682-37187833)
chr4 (20-116)||(37180220-37180316)
chr4 (20-116)||(37189538-37189634)
chr4 (183-231)||(38704220-38704268)
chr4 (44-116)||(37181445-37181517)
chr4 (28-115)||(37187901-37187988)
chr4 (44-116)||(38704293-38704369)
[»] chr5 (2 HSPs)
chr5 (201-319)||(27096701-27096816)
chr5 (201-319)||(27103004-27103119)


Alignment Details
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 179 - 334
Target Start/End: Complemental strand, 37180154 - 37179999
Alignment:
Q  179 tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37180154 tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct 37180055  T
Q  279 acaaataatccaacaattccatctctcaacattccaccattgccagcagtcacttc 334  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37180054 acaaatattccaacaattccatctctcaacattccaccattgccagcagtcacttc 37179999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 179 - 334
Target Start/End: Original strand, 37181583 - 37181738
Alignment:
Q  179 tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37181583 tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct 37181682  T
Q  279 acaaataatccaacaattccatctctcaacattccaccattgccagcagtcacttc 334  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37181683 acaaatattccaacaattccatctctcaacattccaccattgccagcagtcacttc 37181738  T

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Target: chr4; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 179 - 334
Target Start/End: Original strand, 37189700 - 37189855
Alignment:
Q  179 tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37189700 tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct 37189799  T
Q  279 acaaataatccaacaattccatctctcaacattccaccattgccagcagtcacttc 334  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37189800 acaaatattccaacaattccatctctcaacattccaccattgccagcagtcacttc 37189855  T

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Target: chr4; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 183 - 334
Target Start/End: Complemental strand, 37187833 - 37187682
Alignment:
Q  183 ccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaa 282  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||    
T  37187833 ccttcaattccaaatatgcctcagggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttcctagctttcctacaa 37187734  T
Q  283 ataatccaacaattccatctctcaacattccaccattgccagcagtcacttc 334  Q
    ||  ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37187733 attttccaacaattccatctctcaacattccaccattgccagcagccacttc 37187682  T

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Target: chr4; HSP #5
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 37180316 - 37180220
Alignment:
Q  20 catcaaactatcaatggcaatattcaaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaggctcgtcatcttttg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  37180316 catcaaactatcaatggcaatattcaaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgccatcttttg 37180220  T

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Target: chr4; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 37189538 - 37189634
Alignment:
Q  20 catcaaactatcaatggcaatattcaaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaggctcgtcatcttttg 116  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  37189538 catcaaactatcaatggcaatattcaaatccttgatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgccatcttttg 37189634  T

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Target: chr4; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 38704268 - 38704220
Alignment:
Q  183 ccttcaattccaaatatgcctcaaggaaatcttcctccattgcctacta 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38704268 ccttcaattccaaatatgcctcaaggaaatcttcctccattgcctacta 38704220  T

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Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 37181445 - 37181517
Alignment:
Q  44 caaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaggctcgtcatcttttg 116  Q
    ||||||||||||  ||||||||||||| ||||| ||||| |||| |||||||||||| ||||| |||||||||    
T  37181445 caaatccttcattgcaactttacttcttgttgtcacaatgtcaagcatgagcctagaagctcgccatcttttg 37181517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 115
Target Start/End: Complemental strand, 37187988 - 37187901
Alignment:
Q  28 tatcaatggcaatattcaaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaggctcgtcatctttt 115  Q
    |||||||||||  |  |||||||||||||| | |||||||||| |||||||| || |||| |||||||||||| ||||| ||||||||    
T  37187988 tatcaatggcatcaagcaaatccttcatcatagctttacttcttgttgtgaccatgtcaagcatgagcctagaagctcgccatctttt 37187901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 38704369 - 38704293
Alignment:
Q  44 caaatccttcatcacaactt----tacttctagttgtgacaatatcaaacatgagcctagaggctcgtcatcttttg 116  Q
    ||||||||| ||||||||||    ||||||| ||||||||||| |||| ||||| |||||| |||||||||||||||    
T  38704369 caaatccttaatcacaacttaatttacttcttgttgtgacaatgtcaagcatgaacctagaagctcgtcatcttttg 38704293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 201 - 319
Target Start/End: Original strand, 27096701 - 27096816
Alignment:
Q  201 cctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaaataatccaacaattccat 300  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||  |||||||    ||||||||| ||||||    
T  27096701 cctcaaggtaatgttcctccattgcctactatcccttctatgcctaagctcactatgccaccacttcctagcattcctac---caatccaacacttccat 27096797  T
Q  301 ctctcaacattccaccatt 319  Q
    |||||||| ||||||||||    
T  27096798 ctctcaactttccaccatt 27096816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 201 - 319
Target Start/End: Original strand, 27103004 - 27103119
Alignment:
Q  201 cctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaaataatccaacaattccat 300  Q
    |||||||| ||| |||||||||||||||| ||||||||  ||||||| |||||||||||||||||||| ||  |||   |||  ||||||||| ||||||    
T  27103004 cctcaaggtaatgttcctccattgcctaccatcccttcagtgcctaagctcactatgccaccacttcctagcattc---caaccaatccaacacttccat 27103100  T
Q  301 ctctcaacattccaccatt 319  Q
    |||||||| ||||||||||    
T  27103101 ctctcaactttccaccatt 27103119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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