View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6873A_low_34 (Length: 350)
Name: NF6873A_low_34
Description: NF6873A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6873A_low_34 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 9 - 350
Target Start/End: Original strand, 36471995 - 36472336
Alignment:
| Q |
9 |
accacagacatagatgcagaaaatgtcattgcaaaagtggatgtagcacttgccaccttaatagaaaattccccaatcaaaacacaaacatatatacgaa |
108 |
Q |
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| T |
36471995 |
accacagacatagatgcagaaaatgtcattgcaaaagtggatgtagcacttgccaccttaatagaaaattccccaatcaaaacacaaacatatatacgaa |
36472094 |
T |
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| Q |
109 |
catagtaacataaatctctttagtagttaaaaaatacatctaaatatagattttatggtaaagaaaaggatagaattaaggtacctgaggagggattcca |
208 |
Q |
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| T |
36472095 |
catagtaacataaatctctttattagttcaaaaatacatctaaatatagattttatggtaaagaaaaggatagaattaaggtacctgaggagggattcca |
36472194 |
T |
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| Q |
209 |
agtccaatgaaaagtggccctaagataaatcctccaccaagaccaagcaagccaccgattattccagcaattatgccacatgaacaatatagaattaact |
308 |
Q |
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| T |
36472195 |
agtccaatgaaaagtggccctaagataaatcctccaccaagaccaagcaagccaccgattattccagcaattatgccacatgaacaatatagaattaact |
36472294 |
T |
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| Q |
309 |
gcttcacactccaatttattccttgatctccattggaagcta |
350 |
Q |
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| T |
36472295 |
gcttcacactccaatttattccttgatctccattggaagcta |
36472336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 190 - 350
Target Start/End: Original strand, 36463026 - 36463186
Alignment:
| Q |
190 |
tacctgaggagggattccaagtccaatgaaaagtggccctaagataaatcctccaccaagaccaagcaagccaccgattattccagcaattatgccacat |
289 |
Q |
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| T |
36463026 |
tacctgaggagggattccaagtccaaggaagagtggcgctaagataaatcctccaccaagaccaagtaagccaccaattaagccagcaattatgccgcat |
36463125 |
T |
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| Q |
290 |
gaacaatatagaattaactgcttcacactccaatttattccttgatctccattggaagcta |
350 |
Q |
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| T |
36463126 |
gaacaatatagaattaactgcttcacactccaatttattccttgatctcccttggaagcta |
36463186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 36462865 - 36462934
Alignment:
| Q |
9 |
accacagacatagatgcagaaaatgtcattgcaaaagtggatgtagcacttgccaccttaatagaaaatt |
78 |
Q |
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| T |
36462865 |
accacagacatagatgcagaaaatgtcattgcaaaagtggatgtagcacttgataccttcaaagaaaatt |
36462934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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