View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6873A_low_35 (Length: 349)
Name: NF6873A_low_35
Description: NF6873A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6873A_low_35 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 28 - 349
Target Start/End: Original strand, 51873632 - 51873953
Alignment:
| Q |
28 |
gtagggcccaaacctttcttcatgcataaaaacacacactcaccttcatcatcttcctcccatacaaaatacacaaacctcttacatcttctcaaacagc |
127 |
Q |
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| T |
51873632 |
gtagggcccaagcctttcttcatgcataaaaacacacactcaccttcatcatcttcctcccatacaaaatacacaaacctcttacatcttctcaaacagc |
51873731 |
T |
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| Q |
128 |
ttcaaacacaatccatccacgatcactaagcctaagctagaagcaagagcagtggtagctcttgtatattctatcctttgtacatatccaaaactacttg |
227 |
Q |
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| T |
51873732 |
ttcaaacacagtccatccacgatcactaagcctaagctagaagcaagagcagtggtagctcttgtatattctatcctttgtacatatccaaaactacttg |
51873831 |
T |
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| Q |
228 |
ctagtgagatatgtgtaaacctaagccatccccatttctctgtcccacacaaaccaacctcataacttctgatcccaaactactcataaatgaccctcct |
327 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
51873832 |
ctagtgagatatgtgtaaacctaagccatccccatttctctgtcccacacaaaccaacctcataacttctgatcctaaactactcataaatgaccctcct |
51873931 |
T |
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| Q |
328 |
catgatgaagttcaagatcaaa |
349 |
Q |
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| T |
51873932 |
catgatgaagttcaagatcaaa |
51873953 |
T |
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