View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6873A_low_36 (Length: 348)
Name: NF6873A_low_36
Description: NF6873A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6873A_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 8 - 326
Target Start/End: Complemental strand, 6917747 - 6917429
Alignment:
| Q |
8 |
gtgccaagaacagtcatcaaatagggcaaaaattacttatcacttggccctgcaccatctcttagtggaaactgagtgtttgtgatcaatattattattg |
107 |
Q |
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| T |
6917747 |
gtgccaagaacagtcatcaaatagtgcaaaaattacttatcacttggccctgcaccatctcttagtggaaactgagtgtttgtgatcaatattattattg |
6917648 |
T |
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| Q |
108 |
aataataagtctgtgcatttagcattttatattgagtgtgctcaaacaacaagcaaaaggaaaatcagaacctatatgtttcggaatcaacctcgccgcg |
207 |
Q |
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| T |
6917647 |
aataataagtctgtgcatttagcattttatattgagtgtgctcaaacaacaagcaaatggaaaatcagaacctatatgtttcgaaatcaacctcgccgcg |
6917548 |
T |
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| Q |
208 |
ctcaatcttgatggcctggaacttgcctttctggacagttgtgacctctgtatggggagcgaagtgctcccggcttcaaactcgtctccggatagtacct |
307 |
Q |
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| T |
6917547 |
ctcaatcttgatggcctggaacttgccattctggacagttgtgacctctgtatggggagcgaagtgctcccggcttcaaactcgtctccggatagtacct |
6917448 |
T |
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| Q |
308 |
gtttcctgttgcagaactg |
326 |
Q |
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||| ||||||||||||||| |
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| T |
6917447 |
gttccctgttgcagaactg |
6917429 |
T |
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