View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6873A_low_4 (Length: 497)
Name: NF6873A_low_4
Description: NF6873A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6873A_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 447; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 5 - 491
Target Start/End: Complemental strand, 45141971 - 45141485
Alignment:
| Q |
5 |
catattcagtgctctacatgcaagaggcgtggcaacaccattcggtgagattgaattgactctaattccgtaagctccaagctcaccgcacgttgaacgt |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
45141971 |
catattcagtgctctacatgcaagaggcgtggcaacaccatacggtgagattgaattgactctaattccgtaagctccaagctcaccacacgttgaacgt |
45141872 |
T |
|
| Q |
105 |
acaagtcctaagagaccatgtttggacgaaacataatcatggccacgataaccagcaacagaggcagctacactggcagtacaaattatggatccacgga |
204 |
Q |
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|||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45141871 |
acaagtcctaagagaccatgtttggatgtaacataatcatggccacgatttccagcaacagaggcagctacactggcagtacaaattatggatccacgga |
45141772 |
T |
|
| Q |
205 |
tttttctctccaccatgaaacgtgcagcgtgcttgatagctgcgagtgatccacgaacattaatggccatggtgttgtcaaattcattcagatcaaattc |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45141771 |
tttttctctccaccatgaaacgtgcagcgtgcttgatagctgcgagtgatccacgaacattaatggccatggtgttgtcaaattcattcagatcaaattc |
45141672 |
T |
|
| Q |
305 |
tagtatgctgctagacataccaccttcaattccagcgttgctaaacataatgtctagggttccatatttttccaatgcgaaagctactgtttcttcaact |
404 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45141671 |
tagtatgctgctagacataccaccttcaattccagcgttgctaaacataatgtctagggttccatatttttccaatgcgaaagctactgtttcttcaact |
45141572 |
T |
|
| Q |
405 |
tgtttttcatctctcacatcacaatggtggtaactcactttgtctaacccaattgaagttgcaacttgctggccagattcatcattg |
491 |
Q |
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| T |
45141571 |
tgtttttcatctctcacatcacaatggtggtaactcactttgtctaacccaattgaagttgcaacttggtgacccaattcatcattg |
45141485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 9 - 491
Target Start/End: Complemental strand, 45152612 - 45152128
Alignment:
| Q |
9 |
ttcagtgctctacatgcaagaggcgtggcaacaccattcggtgagattgaattgactctaattccgtaagctccaagctcaccgcacgttgaacgtacaa |
108 |
Q |
| |
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||||||||||||||| |||||| |||||||||||| ||||| |||||||| ||||| ||||| |||||||||||||||| ||||||||| || |||| |
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| T |
45152612 |
ttcagtgctctacataaaagaggtgtggcaacaccagaaggtgaaattgaattaactcttattccataagctccaagctcactgcacgttgagcgaacaa |
45152513 |
T |
|
| Q |
109 |
gtcctaagagaccatgtttggacgaaacataatcatggccacgataaccagcaacagaggcagctacactggcagtacaaattatggatccacggatttt |
208 |
Q |
| |
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| |||| |||||||||||||| | ||||||||| || | | ||||||||| || |||| ||||| || || ||||||||||||||||| ||||| |
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| T |
45152512 |
ggcctataagaccatgtttggatgttgtataatcatgtcctgcacatccagcaacaaagccagccacactagccgtgcaaattatggatccacgaatttt |
45152413 |
T |
|
| Q |
209 |
tctctccaccatgaaacgtgcagcgtgcttgatagctgcgagtgatccacgaacattaatggccatggtgttgtcaaattcattcagatcaaattctagt |
308 |
Q |
| |
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||| |||||||| | ||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| | |||| |||| |
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| T |
45152412 |
tctttccaccataacacgcgcagcgtgcttgatagttgtagctgatccacgaacattaatggccatggtgttgtcaaattcatttacatcat----tagt |
45152317 |
T |
|
| Q |
309 |
atgctgctagacatacca------ccttcaattccagcgttgctaaacataatgtctagggttccatatttttccaatgcgaaagctactgtttcttcaa |
402 |
Q |
| |
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|||||| |||||||| || ||| |||||||||| ||||| ||||| ||||||| ||||||||||||||||||||| |||||||| ||||| |||| |
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| T |
45152316 |
atgctgatagacatagcagtagcacctccaattccagcattgctgaacatgatgtctaaggttccatatttttccaatgcaaaagctacggtttcctcaa |
45152217 |
T |
|
| Q |
403 |
cttgtttttcatctctcacatcacaatggtggtaactcactttgtctaacccaattgaagttgcaacttgctggccagattcatcattg |
491 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||| |
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| T |
45152216 |
cttgtttttcatcactcacatcacaatggtggtaactcactttgtctaacccaattgaagttgcaacttggtgacccaattcatcattg |
45152128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 11 - 491
Target Start/End: Complemental strand, 38256429 - 38255952
Alignment:
| Q |
11 |
cagtgctctacatgcaagaggcgtggcaacaccattcggtgagattgaattgactctaattccgtaagctccaagctcaccgcacgttgaacgtacaagt |
110 |
Q |
| |
|
||||||||||||||||||||| || |||||| ||| |||||||||||||||||||| ||||| |||||||||||||||||||| | ||| | ||||| |
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| T |
38256429 |
cagtgctctacatgcaagaggtgtagcaacagcatagggtgagattgaattgactctgattccataagctccaagctcaccgcatgctgacctaacaagg |
38256330 |
T |
|
| Q |
111 |
cctaagagaccatgtttggacgaaacataatcatggccacgataaccagcaacagaggcagctacactggcagtacaaattatggatccacggatttttc |
210 |
Q |
| |
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|||| ||||||||||| || | ||||||||| || | | | | ||||| | ||||||||||||| || |||||||| ||||| || ||||||| |
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|
| T |
38256329 |
cctataagaccatgttttgatgctgtataatcatgtcctgcacatctaccaacaaaaccagctacactggctgtgcaaattattgatcctcgtatttttc |
38256230 |
T |
|
| Q |
211 |
tctccaccatgaaacgtgcagcgtgcttgatagctgcgagtgatccacgaacattaatggccatggtgttgtcaaattcattcagatcaaattctagtat |
310 |
Q |
| |
|
| |||||||| | ||||| ||| |||||||||| ||| || ||||||| || | ||||||||||||||||||||||| || | |||||||||||| |
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| T |
38256229 |
tttccaccattacacgtgaagcatgcttgatagttgcagctgcaccacgaatgttcacagccatggtgttgtcaaattcatttaggttaaattctagtat |
38256130 |
T |
|
| Q |
311 |
gctgctagacataccaccttcaattccagcgttgctaaacataatgtctagggttccatatttttccaatgcgaaagctactgtttcttcaacttgtttt |
410 |
Q |
| |
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||| ||| | | ||| | | ||||| ||||| ||||| ||||||| ||| |||||| | ||||| | |||||| || |||| ||||||||||| |
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|
| T |
38256129 |
gct---agataaaggaccagcgttaccagcattgctgaacatgatgtctaaggtaccatatctctccaacgtgaaagcaacaatttcctcaacttgtttc |
38256033 |
T |
|
| Q |
411 |
tcatctctcacatcacaatggtggtaactcactttgtctaacccaattgaagttgcaacttgctggccagattcatcattg |
491 |
Q |
| |
|
|| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||| || || ||||||||||| |
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|
| T |
38256032 |
tcctctctcacgtcacagtggtggtaactcactttgtctaacccaattgaagttgcaagttggtgacccaattcatcattg |
38255952 |
T |
|
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