View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6873A_low_40 (Length: 336)
Name: NF6873A_low_40
Description: NF6873A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6873A_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 24 - 187
Target Start/End: Complemental strand, 3923887 - 3923724
Alignment:
| Q |
24 |
agaaacttcatcaaccacacgtaaactctatttcttacaatgtgacttcccactctatctataacaaaattacaattgcaaatgcatagatgaggaacca |
123 |
Q |
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| T |
3923887 |
agaaacttcatcaaccacacgtaaactctatttcttacaatgtgacttcccactctatctataacaaaattacaattgcaaatgcatagatgaggaacca |
3923788 |
T |
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| Q |
124 |
tccaaataccattatgtcatatttaggaagaaaattagaattcacccacctgcatctttcatat |
187 |
Q |
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| T |
3923787 |
tccaaataccattatgtcatatttaggaagaaaattagaattcacccacctgcatctttcatat |
3923724 |
T |
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Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 14202065 - 14202125
Alignment:
| Q |
127 |
aaataccattatgtcatatttaggaagaaaattagaattcacccacctgcatctttcatat |
187 |
Q |
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| T |
14202065 |
aaataccatgatgtcatatttaggaagaaatttagaattcaaccactagcatctttgatat |
14202125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 178
Target Start/End: Original strand, 7421245 - 7421304
Alignment:
| Q |
119 |
aaccatccaaataccattatgtcatatttaggaagaaaattagaattcacccacctgcat |
178 |
Q |
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| T |
7421245 |
aaccacccaaataccatgatgtgatattttggaagaaaattagaattcaaccaccagcat |
7421304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 13573961 - 13574018
Alignment:
| Q |
125 |
ccaaataccattatgtcatatttaggaagaaaattagaattcacccacctgcatcttt |
182 |
Q |
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| T |
13573961 |
ccaaatagcatgatattatattaaggaagaaaattagaattcaaccaccagcatcttt |
13574018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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