View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6873A_low_45 (Length: 328)
Name: NF6873A_low_45
Description: NF6873A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6873A_low_45 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 7 - 321
Target Start/End: Original strand, 5172848 - 5173162
Alignment:
| Q |
7 |
aaattttccatccttcattagcaatctcacatccctgactttcttatccttctatggaaattacatgcaaggatcattttcacttatcactctggctaat |
106 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |||| |||||||| |||||| |||||||||||||||||||||||||||||||| | |||||||| |
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|
| T |
5172848 |
aaattttccatccttcattagtaatctcacatccttgacattcttatcactctatgaaaattacatgcaaggatcattttcacttatcattttggctaat |
5172947 |
T |
|
| Q |
107 |
cactccaatcttcagcatctatatattttatctaaaaacagtattggagtacacattgaaactgaaaaaacaaagtggtttccgaaatttcaattgaagt |
206 |
Q |
| |
|
||||||||||||||||||||| |||||| ||| |||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
5172948 |
cactccaatcttcagcatctacatatttcatcgaaaaacagcactggagtacacattgaaactgaaaaaacaaagtggtttcctaaatttcaattgaagt |
5173047 |
T |
|
| Q |
207 |
ccctcattcttagaaattgcaacctaaacaaagacaaaggaagagtcattcctacttttctttcttatcaatataatttgattctgatggacctctctag |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
5173048 |
ccctcattcttagaaattgcaacctaaacaaggacaaaggaagtgtcattcctacttttctttcttatcaatataatttgatactgatggacctctctag |
5173147 |
T |
|
| Q |
307 |
caacaatattcttgg |
321 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
5173148 |
caacaatattgttgg |
5173162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 7 - 316
Target Start/End: Complemental strand, 4842677 - 4842368
Alignment:
| Q |
7 |
aaattttccatccttcattagcaatctcacatccctgactttcttatccttctatggaaattacatgcaaggatcattttcacttatcactctggctaat |
106 |
Q |
| |
|
||||||||||||||||| || ||||||||||||| |||| |||||||| |||||| |||||||||||||||||||||||||||||||| | |||||||| |
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|
| T |
4842677 |
aaattttccatccttcactaccaatctcacatccttgacattcttatcactctatgaaaattacatgcaaggatcattttcacttatcaatttggctaat |
4842578 |
T |
|
| Q |
107 |
cactccaatcttcagcatctatatattttatctaaaaacagtattggagtacacattgaaactgaaaaaacaaagtggtttccgaaatttcaattgaagt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
4842577 |
cactccaatcttcagcatctatatatttcatctaaaaacagtattggagtacacattgaaactgaaaaaacaaagtggtttcctaaatttcaattgaagt |
4842478 |
T |
|
| Q |
207 |
ccctcattcttagaaattgcaacctaaacaaagacaaaggaagagtcattcctacttttctttcttatcaatataatttgattctgatggacctctctag |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
4842477 |
ccctcattcttagaaattgcaacctaaacatgaagaaaggaagtgtcattcctacttttctttcttatcaatataatttgatagtgatggacctctctag |
4842378 |
T |
|
| Q |
307 |
caacaatatt |
316 |
Q |
| |
|
|||||||||| |
|
|
| T |
4842377 |
caacaatatt |
4842368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 11 - 288
Target Start/End: Original strand, 5159936 - 5160213
Alignment:
| Q |
11 |
tttccatccttcattagcaatctcacatccctgactttcttatccttctatggaaattacatgcaaggatcattttcacttatcactctggctaatcact |
110 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||| | | |||||||||||||||||||||||||||||||||||||||| | | |||| |||||||||| | |
|
|
| T |
5159936 |
tttccatctttcattagcaatctcacatcactggcatacttatccttctatggaaattacatgcaaggatcattttcattgagcactttggctaatcatt |
5160035 |
T |
|
| Q |
111 |
ccaatcttcagcatctatatattttatctaaaaacagtattggagtacacattgaaactgaaaaaacaaagtggtttccgaaatttcaattgaagtccct |
210 |
Q |
| |
|
|||||||| || ||||||||||| ||| ||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| || |
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|
| T |
5160036 |
ccaatcttgaggttctatatatttcatcaaaaaacaatattggagtagacattgaaactgaaaaaacaaagtggtttcctaaatttcaattgaagtcact |
5160135 |
T |
|
| Q |
211 |
cattcttagaaattgcaacctaaacaaagacaaaggaagagtcattcctacttttctttcttatcaatataatttgat |
288 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5160136 |
cattcttagaaattgcaacctaaacaaggacaaaggaagtgtcattcctacttttctttcttatcaatacaatttgat |
5160213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 7 - 286
Target Start/End: Original strand, 5195574 - 5195853
Alignment:
| Q |
7 |
aaattttccatccttcattagcaatctcacatccctgactttcttatccttctatggaaattacatgcaaggatcattttcacttatcactctggctaat |
106 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||| | | |||||||||||||||||||||||||||||||||||||||| | | |||| |||||||| |
|
|
| T |
5195574 |
aaattttccatctttcattagcaatctcacatcactggcatacttatccttctatggaaattacatgcaaggatcattttcattgagcactttggctaat |
5195673 |
T |
|
| Q |
107 |
cactccaatcttcagcatctatatattttatctaaaaacagtattggagtacacattgaaactgaaaaaacaaagtggtttccgaaatttcaattgaagt |
206 |
Q |
| |
|
|| ||||||||| || ||||||||||| ||| ||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5195674 |
cattccaatcttgaggttctatatatttcatcaaaaaacaatattggagtagacattgaaactgaaaaaacaaagtggtttcctaaatttcaattgaagt |
5195773 |
T |
|
| Q |
207 |
ccctcattcttagaaattgcaacctaaacaaagacaaaggaagagtcattcctacttttctttcttatcaatataatttg |
286 |
Q |
| |
|
| || ||| |||||||||||||||||||||| ||| ||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5195774 |
cacttattgttagaaattgcaacctaaacaaggacgaaggaagtgtcattcctacttttctttcatatcaatataatttg |
5195853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 7 - 313
Target Start/End: Original strand, 5182180 - 5182483
Alignment:
| Q |
7 |
aaattttccatccttcattagcaatctcacatccctgactttcttatccttctatggaaattacatgcaaggatcattttcacttatcactctggctaat |
106 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||| | | |||||||||||||||||||||||||||||||||||||||| | | |||| |||||||| |
|
|
| T |
5182180 |
aaattttccatctttcattagcaatctcacatcactggcatacttatccttctatggaaattacatgcaaggatcattttcattgagcactttggctaat |
5182279 |
T |
|
| Q |
107 |
cactccaatcttcagcatctatatattttatctaaaaacagtattggagtacacattgaaactgaaaaaacaaagtggtttccgaaatttcaattgaagt |
206 |
Q |
| |
|
||||| |||||||||||||||||||||| | | |||||||| ||||| | ||||||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
5182280 |
cactcaaatcttcagcatctatatatttcaccggaaaacagt---ggagttctcattgaaactgaaaagacaaagtggtttcccaaatttcaattgaaga |
5182376 |
T |
|
| Q |
207 |
ccctcattcttagaaattgcaacctaaacaaagacaaaggaagagtcattcctacttttctttcttatcaatataatttgattctgatggacctctctag |
306 |
Q |
| |
|
| ||||||||||||||||||||||||||||| || |||||| | |||||||||||||||||||| ||||||||||||||||| | |||||||||| || |
|
|
| T |
5182377 |
cactcattcttagaaattgcaacctaaacaaggagaaaggaggtgtcattcctacttttctttcatatcaatataatttgatattcttggacctctccag |
5182476 |
T |
|
| Q |
307 |
caacaat |
313 |
Q |
| |
|
|||||| |
|
|
| T |
5182477 |
aaacaat |
5182483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 7 - 312
Target Start/End: Original strand, 5213740 - 5214042
Alignment:
| Q |
7 |
aaattttccatccttcattagcaatctcacatccctgactttcttatccttctatggaaattacatgcaaggatcattttcacttatcactctggctaat |
106 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||| | | ||||||| ||| |||||||||||||||||||||||||||| | | |||| |||||||| |
|
|
| T |
5213740 |
aaattttccatccttcattagtaatctcacatcactggcatacttatccctctttggaaattacatgcaaggatcattttcattgagcactttggctaat |
5213839 |
T |
|
| Q |
107 |
cactccaatcttcagcatctatatattttatctaaaaacagtattggagtacacattgaaactgaaaaaacaaagtggtttccgaaatttcaattgaagt |
206 |
Q |
| |
|
||||||||||| |||||||||||||||| ||| ||| || |||| | | |||||||||||||||| ||||||||||| || ||||||||||||||| |
|
|
| T |
5213840 |
cactccaatctccagcatctatatatttcatcacaaagca---ttggtgcaaacattgaaactgaaaagacaaagtggttacccaaatttcaattgaaga |
5213936 |
T |
|
| Q |
207 |
ccctcattcttagaaattgcaacctaaacaaagacaaaggaagagtcattcctacttttctttcttatcaatataatttgattctgatggacctctctag |
306 |
Q |
| |
|
| ||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||| |||||||||| |||||| |||||||||| || || |
|
|
| T |
5213937 |
cactcattcttagaaattgcaacttaaacaaggacaaaggaagtgtcattcctacttttctttcatatcaatatagtttgatattgatggacctatccag |
5214036 |
T |
|
| Q |
307 |
caacaa |
312 |
Q |
| |
|
|||||| |
|
|
| T |
5214037 |
caacaa |
5214042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 7 - 286
Target Start/End: Complemental strand, 4857150 - 4856875
Alignment:
| Q |
7 |
aaattttccatccttcattagcaatctcacatccctgactttcttatccttctatggaaattacatgcaaggatcattttcacttatcactctggctaat |
106 |
Q |
| |
|
||||||||||||||||| || |||||||||||| || | | || |||| |||||||||||||||||||||||||||||||| | | |||| |||||||| |
|
|
| T |
4857150 |
aaattttccatccttcactaccaatctcacatctcttgcatact-atccatctatggaaattacatgcaaggatcattttcattgaccactttggctaat |
4857052 |
T |
|
| Q |
107 |
cactccaatcttcagcatctatatattttatctaaaaacagtattggagtacacattgaaactgaaaaaacaaagtggtttccgaaatttcaattgaagt |
206 |
Q |
| |
|
||||| |||||||||||||||||||||| | | |||||||| ||||| | ||||||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
4857051 |
cactcaaatcttcagcatctatatatttcaccggaaaacagt---ggagttctcattgaaactgaaaagacaaagtggtttcccaaatttcaattgaaga |
4856955 |
T |
|
| Q |
207 |
ccctcattcttagaaattgcaacctaaacaaagacaaaggaagagtcattcctacttttctttcttatcaatataatttg |
286 |
Q |
| |
|
| |||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4856954 |
cactcattcttagaaattgcaacctaaacatggacgaaggaagtgtcattcctacttttctttcatatcaatataatttg |
4856875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 151 - 315
Target Start/End: Original strand, 7142256 - 7142419
Alignment:
| Q |
151 |
tggagtacacattgaaactgaaaaaacaaagtggtttccgaaatttcaattgaagtccctcattcttagaaattgcaacctaaacaaagacaaaggaaga |
250 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||||| | ||||||| | | | || | | ||| ||||||||||| ||||| |||||||||| |
|
|
| T |
7142256 |
tggagtacacgttgaaactgaaaatacaaagtggtttcctagatttcaactacatacactta-tgttaaaaattgcaaccaaaacatggacaaaggaaat |
7142354 |
T |
|
| Q |
251 |
gtcattcctacttttctttcttatcaatataatttg--attctgatggacctctctagcaacaatat |
315 |
Q |
| |
|
|||||||||| |||| |||| |||||| |||||||| ||||| |||||||||| || |||||||| |
|
|
| T |
7142355 |
gtcattcctagttttttttcatatcaacataatttggcattct--tggacctctccagaaacaatat |
7142419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 5202882 - 5202925
Alignment:
| Q |
240 |
acaaaggaagagtcattcctacttttctttcttatcaatataatt |
284 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||| ||||||||| |
|
|
| T |
5202882 |
acaaaggaagagtcattcctagttttctttcatat-aatataatt |
5202925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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