View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6873A_low_51 (Length: 310)
Name: NF6873A_low_51
Description: NF6873A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6873A_low_51 |
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Alignment Details
Target: chr6 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 20 - 170
Target Start/End: Original strand, 31114516 - 31114667
Alignment:
| Q |
20 |
cttttctcccaatcaaataagcttt-agaaccaatgtccattcaaagaggtggatcccattatgccactcactctccattatctgcattgatgatagaag |
118 |
Q |
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| T |
31114516 |
cttttctcccaatcaaataagcttttagaaccaatgtcctttctaagagttgggtcccattatgccactcactctccattatctgcattgatgatagaag |
31114615 |
T |
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| Q |
119 |
cttgtatcccataaacacagtgaactgggttcaccttggacggttcatggac |
170 |
Q |
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| T |
31114616 |
cttgtatcccagaaacacagtgaactgggttcactttggtcgattcatggac |
31114667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 31114681 - 31114739
Alignment:
| Q |
238 |
ataaatgggttgaagcatcaaaacgacgtcatctttatctatccttggttgatgtccat |
296 |
Q |
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| T |
31114681 |
ataaatgggttgaagcatcaaaacgacgtcatctttatctatccttggttgatgtccat |
31114739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 197
Target Start/End: Original strand, 31088499 - 31088611
Alignment:
| Q |
85 |
actcactctccattatctgcattgatgatagaagcttgtatcccataaacacagtgaactgggttcaccttggacggttcatggacgcaattatgttcaa |
184 |
Q |
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| T |
31088499 |
actcactctctgttgtccgctttgatgatataagcttctatcaaagaaacacagagaagtgggttcactttcgttgattcgtggatacaattatgttcaa |
31088598 |
T |
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| Q |
185 |
cccccactctcaa |
197 |
Q |
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| T |
31088599 |
cccacactctcaa |
31088611 |
T |
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