View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6873A_low_6 (Length: 477)
Name: NF6873A_low_6
Description: NF6873A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6873A_low_6 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 23 - 477
Target Start/End: Complemental strand, 3036837 - 3036382
Alignment:
| Q |
23 |
aaccatacctcatctttggcatttgtgttcatgcatgattgagccatcagaagcaattcaccatcttcaaattgagcataatttgcattttttc-cccat |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3036837 |
aaccatacctcatctttggcatttgtgttcatgcatgattgagccatcagaagcaattcaccatcttcaaattgagcataatttgcattttttttcccat |
3036738 |
T |
|
| Q |
122 |
aggggacattcattctgatagtgtcccagctcgtgacacttataacactcaatagaatctgtgttgattcttcccctaccctttcctctagcacctgaac |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3036737 |
aggggacattcattctgatagtgtcccagcttgtgacacttataacactcaatagaatctttgttgattcttcccctaccctttcctctagcacctgaat |
3036638 |
T |
|
| Q |
222 |
gccctcttcctctaccaaatcccatagatcctcttcctccattcgaaaccttcaaagcttgctcaatatcaatttcttgattctgagattttatgcgtcg |
321 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3036637 |
gccctcttcctctaccatatcccatagatcctcttcctccattcgaaaccttcaaagcttgctcaatatcaatttcttgattctgagattttatgcgtcg |
3036538 |
T |
|
| Q |
322 |
ttcttgaacaagtaagctactctgaagttcatcgatgaagaatgcagtcacatcattagattcttcaatagagcacaccacataattgaacttacttgtt |
421 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3036537 |
ttcttgaacaagtaagctactctgaagttcatcgatgaagagtgcagtcacatcattagattcttcaatagagcacaccacataattgaacttacttgtt |
3036438 |
T |
|
| Q |
422 |
aaagatctcagaatcttctcaacaaccagtgtttgatccatcttttcaccatgtga |
477 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3036437 |
aaagatctcagaatcttctcaacaaccagtgtttgatccatcttttcaccatgtga |
3036382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 23 - 476
Target Start/End: Complemental strand, 16863584 - 16863130
Alignment:
| Q |
23 |
aaccatacctcatctttggcatttgtgttcatgcatgattgagccatcagaagcaattcaccatcttcaaattgagcataatttgcattttttccccata |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | | |||| | |||||||| | |||||| |
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| T |
16863584 |
aaccatacctcatctttggcatttgtgttcaaacatgattgagccatcagaagcaattcaccatcttcaaactcaacatagtgtgcattttcttcccata |
16863485 |
T |
|
| Q |
123 |
ggggacattcattctgatagtgtcccagctcgtgacactta-taacactcaatagaatctgtgttgattcttcccctaccctttcctctagcacctgaac |
221 |
Q |
| |
|
| ||||||||||| |||||||||||||||| ||||||||| || || |||| | | |||| |||||||| |||||| |||||||| ||||||||| |
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|
| T |
16863484 |
gaggacattcattttgatagtgtcccagcttgtgacactttgtagcattcaacacttccattgttaattcttcctctaccccttcctctaacacctgaac |
16863385 |
T |
|
| Q |
222 |
gccctcttcctctaccaaatcccatagatcctcttcctccattcgaaaccttcaaagcttgctcaatatcaatttcttgattctgagattttatgcgtcg |
321 |
Q |
| |
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||||||||||||||||| |||| | |||||||||||| ||||| || ||||||||||||| |||||||||||||||||||| |||| ||| |||||| | |
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| T |
16863384 |
gccctcttcctctaccatatcctacagatcctcttccaccattagatgccttcaaagcttgttcaatatcaatttcttgattttgagttttcatgcgttg |
16863285 |
T |
|
| Q |
322 |
ttcttgaacaagtaagctactctgaagttcatcgatgaagaatgcagtcacatcattagattcttcaatagagcacaccacataattgaacttacttgtt |
421 |
Q |
| |
|
||||||||||||||| || || |||||||||| || ||| || ||| |||||||| ||||| | ||| ||||||| ||| ||||| || ||||||||| |
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| T |
16863284 |
ttcttgaacaagtaaactgctatgaagttcattaattgagagtgtagttacatcatttgattcatgaattgagcacagcacgtaattaaatttacttgtt |
16863185 |
T |
|
| Q |
422 |
aaagatctcagaatcttctcaacaaccagtgtttgatccatcttttcaccatgtg |
476 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||| |||||||||| |
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|
| T |
16863184 |
aaagatctcagaatcttttcaacaacaagtgtttgatccatcttctcaccatgtg |
16863130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 23 - 472
Target Start/End: Complemental strand, 20529205 - 20528758
Alignment:
| Q |
23 |
aaccatacctcatctttggcatttgtgttcatgcatgattgagccatcagaagcaattcaccatcttcaaattgagcataatttgcattttttccccata |
122 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||| ||||||||| ||| | ||||||||||||||||||| ||||||||||| |||| | |||||| |
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|
| T |
20529205 |
aaccatacctcatctttgacatttgtgttcaatcatgtttgagccatgagatgaaattcaccatcttcaaattcagcataatttgaatttggttcccata |
20529106 |
T |
|
| Q |
123 |
ggggacattcattctgatagtgtcccagctcgtgacacttataacactcaatagaatctgtgttgattcttcccctaccctttcctctagcacctgaacg |
222 |
Q |
| |
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| |||||||||||||||||||||| |||| ||||||||||| || |||| ||||| |||| |||||||| | || ||||||| | |||||| |
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|
| T |
20529105 |
gatgacattcattctgatagtgtcctagcttgtgacacttattgcattcaactaaatct-tgttaattcttcctccacatcttcctctttg-cttgaacg |
20529008 |
T |
|
| Q |
223 |
ccctcttcctctaccaaatcccatagatcctcttcctccattcgaaaccttcaaagcttgctcaatatcaatttcttgattctgagattttatgcgtcgt |
322 |
Q |
| |
|
|||||||||||| ||| |||||| |||||||||||| ||||| ||||||||||||||||||||| ||||| ||||||| || |||||||| |||||| || |
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|
| T |
20529007 |
ccctcttcctctcccatatcccacagatcctcttccaccattagaaaccttcaaagcttgctcagtatcagtttcttggttttgagatttcatgcgttgt |
20528908 |
T |
|
| Q |
323 |
tcttgaacaagtaagctactctgaagttcatcgatgaagaatgcagtcacatcattagattcttcaatagagcacaccacataattgaacttacttgtta |
422 |
Q |
| |
|
|||||||||||||| ||||| || | ||||| ||| | | || ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
20528907 |
tcttgaacaagtaaactactatgtaattcattaatggaaagtgttgtcacatcattggattcttcaatagatcacaccacataattgaacttgcttgtta |
20528808 |
T |
|
| Q |
423 |
aagatctcagaatcttctcaacaaccagtgtttgatccatcttttcacca |
472 |
Q |
| |
|
||||||||| ||||| ||||||| ||| ||||||||||||||||||||| |
|
|
| T |
20528807 |
aagatctcaagatcttttcaacaagcagagtttgatccatcttttcacca |
20528758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 157; Significance: 3e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 23 - 476
Target Start/End: Original strand, 40612799 - 40613240
Alignment:
| Q |
23 |
aaccatacctcatctttggcatttgtgttcatgcatgattgagccatcagaagcaattcaccatcttcaaattgagcataatttgcattttttccccata |
122 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||| ||||| ||||| ||||| ||||||||||||||||| | |||| | || ||||||| | |||||| |
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|
| T |
40612799 |
aaccatacctcatctttggcgtttgtgttcaagcaagattgggccataagaagtaattcaccatcttcaaacttagcaaagttagcattttcttcccata |
40612898 |
T |
|
| Q |
123 |
ggggacattcattctgatagtgtcccagctcgtgacacttataacactcaatagaatctgtgttgattcttcccctaccctttcctctagcacctgaacg |
222 |
Q |
| |
|
| ||||| |||||||| |||||||||| || | |||||||| ||||||||| | || ||||||||| ||||||||||||||||||| |
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|
| T |
40612899 |
gaggacactcattctggtagtgtcccaacttgcgacacttaaaacactcaacacttgctttgttgattc------------ttcctctagcacctgaacg |
40612986 |
T |
|
| Q |
223 |
ccctcttcctctaccaaatcccatagatcctcttcctccattcgaaaccttcaaagcttgctcaatatcaatttcttgattctgagattttatgcgtcgt |
322 |
Q |
| |
|
||||||||||||||| | |||| | |||||| | ||||| ||||||||||||||||| |||| |||||| |||||||| |||||||| ||| || || |
|
|
| T |
40612987 |
tcctcttcctctaccataccccacgaaacctctttcaccattggaaaccttcaaagcttgttcaacatcaatgtcttgattttgagatttcatgtgttgt |
40613086 |
T |
|
| Q |
323 |
tcttgaacaagtaagctactctgaagttcatcgatgaagaatgcagtcacatcattagattcttcaatagagcacaccacataattgaacttacttgtta |
422 |
Q |
| |
|
|||||||||||||| |||||||| | ||||| || | | || ||| || || || ||||||||||| || ||||||||||||||||| |||||||||| |
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|
| T |
40613087 |
tcttgaacaagtaaactactctgcaactcatcaattgatagtgtagtgacgtcgtttgattcttcaatggaacacaccacataattgaatttacttgtta |
40613186 |
T |
|
| Q |
423 |
aagatctcagaatcttctcaacaaccagtgtttgatccatcttttcaccatgtg |
476 |
Q |
| |
|
||||||||| |||||| ||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
40613187 |
aagatctcaaaatcttttcaacaaccagcgtttgatccatcttctcaccatgtg |
40613240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 269 - 476
Target Start/End: Complemental strand, 20542289 - 20542082
Alignment:
| Q |
269 |
accttcaaagcttgctcaatatcaatttcttgattctgagattttatgcgtcgttcttgaacaagtaagctactctgaagttcatcgatgaagaatgcag |
368 |
Q |
| |
|
|||||||||||||| |||| ||||| ||||||||||||||||| |||||| |||||||||||||||| |||||||| | ||||| || | | | || |
|
|
| T |
20542289 |
accttcaaagcttgttcaacatcaaagtcttgattctgagatttcatgcgttgttcttgaacaagtaaactactctgcaactcatcaattgatagcgtag |
20542190 |
T |
|
| Q |
369 |
tcacatcattagattcttcaatagagcacaccacataattgaacttacttgttaaagatctcagaatcttctcaacaaccagtgtttgatccatcttttc |
468 |
Q |
| |
|
| || ||||| ||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||| || |
|
|
| T |
20542189 |
tgacgtcatttgattcttcaatggaacacaccacataattgaatttacttgttaaagatctcagaatcttttcaacaaccagcgtttgatccatcttctc |
20542090 |
T |
|
| Q |
469 |
accatgtg |
476 |
Q |
| |
|
|||||||| |
|
|
| T |
20542089 |
accatgtg |
20542082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 23 - 211
Target Start/End: Complemental strand, 20542511 - 20542323
Alignment:
| Q |
23 |
aaccatacctcatctttggcatttgtgttcatgcatgattgagccatcagaagcaattcaccatcttcaaattgagcataatttgcattttttccccata |
122 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||| ||||||||||| ||||| ||||||||||||||||| | |||| | || ||||||| | |||||| |
|
|
| T |
20542511 |
aaccatacctcatctttggcgtttgtgttcaagcaagattgagccataagaagtaattcaccatcttcaaactcagcaaagttagcattttcttcccata |
20542412 |
T |
|
| Q |
123 |
ggggacattcattctgatagtgtcccagctcgtgacacttataacactcaatagaatctgtgttgattcttcccctaccctttcctcta |
211 |
Q |
| |
|
| ||||| |||||||||||||||||||||| ||||||||| ||||||||| | || ||||||||||||| || ||| |||||||| |
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|
| T |
20542411 |
gaggacactcattctgatagtgtcccagcttgtgacacttgaaacactcaacacttgctttgttgattcttcctctgccccttcctcta |
20542323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 367 - 449
Target Start/End: Original strand, 23940152 - 23940233
Alignment:
| Q |
367 |
agtcacatcattagattcttcaatagagcacaccacataattgaacttacttgttaaagatctcagaatcttctcaacaacca |
449 |
Q |
| |
|
|||||||||||| ||||||||||| || ||||||||| |||||||||| |||| ||| ||||| | |||||||||||| |||| |
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|
| T |
23940152 |
agtcacatcatttgattcttcaatggaacacaccacacaattgaacttgcttg-taatgatcttaaaatcttctcaaccacca |
23940233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 411
Target Start/End: Original strand, 29945174 - 29945214
Alignment:
| Q |
371 |
acatcattagattcttcaatagagcacaccacataattgaa |
411 |
Q |
| |
|
|||||||| ||||||||||| |||||||| ||||||||||| |
|
|
| T |
29945174 |
acatcatttgattcttcaattgagcacacaacataattgaa |
29945214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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