View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6873A_low_61 (Length: 291)
Name: NF6873A_low_61
Description: NF6873A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6873A_low_61 |
 | |
|
| [»] scaffold0428 (1 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 7 - 272
Target Start/End: Original strand, 33059080 - 33059345
Alignment:
| Q |
7 |
ccattcagtcacattacgaccaaacaaaaacgagcccaatactttaattgctagtggtagacctttagcataatgtagtatctgatctaccaaattttga |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33059080 |
ccattcagtcacattacgaccaaacaaaaacgagcccaatactttaattgctagtggtagacctttagcataatgtagtatctgatctaccaaattttga |
33059179 |
T |
|
| Q |
107 |
taattactcataataattttctcatctttgaaagcttttcgacaaaataacatgtgagcttcattccaatccaatagtgaaactttgtaaactacatcca |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33059180 |
taattactcataataattttctcatctttgaaagcttttcgacaaaataacatgtgagcttcattccaatccaatagtgaaactttgtaaactacatcca |
33059279 |
T |
|
| Q |
207 |
ctccatacgctttcaatacatgctcatctctagaaatgataataattctactacctggacctaacc |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33059280 |
ctccatacgctttcaatacatgctcatctctagaaatgataataattctactacctggacctaacc |
33059345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 7 - 262
Target Start/End: Original strand, 33287059 - 33287314
Alignment:
| Q |
7 |
ccattcagtcacattacgaccaaacaaaaacgagcccaatactttaattgctagtggtagacctttagcataatgtagtatctgatctaccaaattttga |
106 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||| ||||||| || ||||||| ||| | |
|
|
| T |
33287059 |
ccattccgtcacattacgaccaaacaaaaatgagcccaatactttaattgctaacggtagaccattagcataatccagtatctcatataccaaactttca |
33287158 |
T |
|
| Q |
107 |
taattactcataataattttctcatctttgaaagcttttcgacaaaataacatgtgagcttcattccaatccaatagtgaaactttgtaaactacatcca |
206 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||| |
|
|
| T |
33287159 |
taatttctcataataattttctcttctttgaaagcttttcgacaaaataacatgtgagcttcattccaatccaagagtggaactttgtagactacatcca |
33287258 |
T |
|
| Q |
207 |
ctccatacgctttcaatacatgctcatctctagaaatgataataattctactacct |
262 |
Q |
| |
|
|||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33287259 |
ctccatactcttccaatatatgctcatctctagaaatgataataattctactacct |
33287314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 7 - 272
Target Start/End: Complemental strand, 31561372 - 31561107
Alignment:
| Q |
7 |
ccattcagtcacattacgaccaaacaaaaacgagcccaatactttaattgctagtggtagacctttagcataatgtagtatctgatctaccaaattttga |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||| ||||||| |||| ||||||||||| |
|
|
| T |
31561372 |
ccattcagtcacattacgaccaaacaaaaatgagcccaatactgtaattgctagcggtagacctttagcataattcagtatctcatctgccaaattttga |
31561273 |
T |
|
| Q |
107 |
taattactcataataattttctcatctttgaaagcttttcgacaaaataacatgtgagcttcattccaatccaatagtgaaactttgtaaactacatcca |
206 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| || | || ||| |||| |||||||||||||||||||| |
|
|
| T |
31561272 |
taatcactcataataattttctcaactttgaaagcttttcgacaaaataacatgtgagactcggcctgattcaaaagtggaactttgtaaactacatcca |
31561173 |
T |
|
| Q |
207 |
ctccatacgctttcaatacatgctcatctctagaaatgataataattctactacctggacctaacc |
272 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
31561172 |
ctccatactctttcaatatatgctcatctctagaaatgataataattctactccctgcacctaacc |
31561107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 7 - 270
Target Start/End: Original strand, 33402131 - 33402394
Alignment:
| Q |
7 |
ccattcagtcacattacgaccaaacaaaaacgagcccaatactttaattgctagtggtagacctttagcataatgtagtatctgatctaccaaattttga |
106 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||| ||||||||| | ||||| || | ||||||||||| |
|
|
| T |
33402131 |
ccattcagtcacattacgaccgaacaaaaatgagcccaatactttaattgcaagtggtagaccactagcataattcaatatcttatttgccaaattttga |
33402230 |
T |
|
| Q |
107 |
taattactcataataattttctcatctttgaaagcttttcgacaaaataacatgtgagcttcattccaatccaatagtgaaactttgtaaactacatcca |
206 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| | |||| ||| |||||| ||| ||| ||||||||||||||| |||| |
|
|
| T |
33402231 |
taattactcataataattttctcagctttgaaagcttttcgacaaaataacttatgagattcggtccaattcaaaagttgaactttgtaaactacgtcca |
33402330 |
T |
|
| Q |
207 |
ctccatacgctttcaatacatgctcatctctagaaatgataataattctactacctggacctaa |
270 |
Q |
| |
|
|| ||||| ||||||||| ||| |||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
33402331 |
cttcatactctttcaatatatgttcatctctagaaatgataataattctactacccgcacctaa |
33402394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 7 - 272
Target Start/End: Original strand, 33389589 - 33389854
Alignment:
| Q |
7 |
ccattcagtcacattacgaccaaacaaaaacgagcccaatactttaattgctagtggtagacctttagcataatgtagtatctgatctaccaaattttga |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||| ||||||| | |||||||||| |
|
|
| T |
33389589 |
ccattcagtcacattacgaccaaacaaaaatgagcccaatactttaattgctagtggaagaccattagcataactcagtatctcaaaatccaaattttgg |
33389688 |
T |
|
| Q |
107 |
taattactcataataattttctcatctttgaaagcttttcgacaaaataacatgtgagcttcattccaatccaatagtgaaactttgtaaactacatcca |
206 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||||||||| ||||||||||| |||||| || ||| || ||| |||| ||||||||||||||| |||| |
|
|
| T |
33389689 |
taactactcataataattttctcatgtttgaaagctttttgacaaaataacttgtgagaatcggtccgattcaaaagtggaactttgtaaactacgtcca |
33389788 |
T |
|
| Q |
207 |
ctccatacgctttcaatacatgctcatctctagaaatgataataattctactacctggacctaacc |
272 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
33389789 |
ctccatactctttcaatatatgctcatctctagaaatgataattattctactacctgcacctaacc |
33389854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 7 - 272
Target Start/End: Original strand, 33411470 - 33411735
Alignment:
| Q |
7 |
ccattcagtcacattacgaccaaacaaaaacgagcccaatactttaattgctagtggtagacctttagcataatgtagtatctgatctaccaaattttga |
106 |
Q |
| |
|
|||||||| |||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| || | ||||||||||| |
|
|
| T |
33411470 |
ccattcagccacactatgaccaaacaaaaatgagcccaatactttaattgctagtggtagacctttagcataatctagtatctcatttgccaaattttga |
33411569 |
T |
|
| Q |
107 |
taattactcataataattttctcatctttgaaagcttttcgacaaaataacatgtgagcttcattccaatccaatagtgaaactttgtaaactacatcca |
206 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||||||||||||| || || || | | || || |||| |||||||||||||||||||| |
|
|
| T |
33411570 |
taatcactcataataattttctcaactttgaaagcttttcgacaaaataactcgtaagaatctgtactattcataagtggaactttgtaaactacatcca |
33411669 |
T |
|
| Q |
207 |
ctccatacgctttcaatacatgctcatctctagaaatgataataattctactacctggacctaacc |
272 |
Q |
| |
|
|||| ||| ||||||||| ||||||||||||||||||||||| ||||||||||| | |||||||| |
|
|
| T |
33411670 |
ctccgtactctttcaatatatgctcatctctagaaatgataacgattctactacccgcacctaacc |
33411735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 7 - 272
Target Start/End: Original strand, 33273309 - 33273574
Alignment:
| Q |
7 |
ccattcagtcacattacgaccaaacaaaaacgagcccaatactttaattgctagtggtagacctttagcataatgtagtatctgatctaccaaattttga |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||| ||| |||| || | || |||| | |
|
|
| T |
33273309 |
ccattcagtcacattacgaccaaacaaaaatgagcccaatactataattgctagtggtagaccattagcataatctagaatctcatacgctaagttttca |
33273408 |
T |
|
| Q |
107 |
taattactcataataattttctcatctttgaaagcttttcgacaaaataacatgtgagcttcattccaatccaatagtgaaactttgtaaactacatcca |
206 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||| ||||||||||| |||||| || |||||| ||| |||| ||||||||||||| |||||| |
|
|
| T |
33273409 |
taattactcataataactttctcaaatttgaaagctttttgacaaaataacttgtgagaatctgtccaattcaaaagtggaactttgtaaactgcatcca |
33273508 |
T |
|
| Q |
207 |
ctccatacgctttcaatacatgctcatctctagaaatgataataattctactacctggacctaacc |
272 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
33273509 |
ctccatagtatttcaatatatgctcatctctagaaatgattataattctactacctgcacctaacc |
33273574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 8 - 261
Target Start/End: Original strand, 9168289 - 9168545
Alignment:
| Q |
8 |
cattcagtcacattacgaccaaacaaaaacgagcccaatactttaattgctagtggtagacctttagcataatgtagtatctgatctaccaaattttgat |
107 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||| ||||||| || | |||||||||||| |
|
|
| T |
9168289 |
cattcagtcacattacgaccaaacaaaaatgagcccaatactttaattgctaatggtagacctttcgcataattaagtatctcatatgccaaattttgat |
9168388 |
T |
|
| Q |
108 |
aattactcataataattttctcatctttgaaagcttttcgacaaaataacatgtgagcttcattccaatccaatagtgaaactttgtaaactacatcc-- |
205 |
Q |
| |
|
||||||| ||||| |||||||| |||||||||||||||| |||||||| ||||| |||| || || ||| |||| ||||||||||||||||||| |
|
|
| T |
9168389 |
aattactgctaatagttttctcaagtttgaaagcttttcgataaaataactagtgagattcagtctgattcaagagtggaactttgtaaactacatccag |
9168488 |
T |
|
| Q |
206 |
-actccatacgctttcaatacatgctcatctctagaaatgataataattctactacc |
261 |
Q |
| |
|
||||||||| ||||||||| ||||||||||| ||| | |||||||||||||||||| |
|
|
| T |
9168489 |
tactccatactctttcaatatatgctcatctcaagatacgataataattctactacc |
9168545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 7 - 272
Target Start/End: Original strand, 33264166 - 33264431
Alignment:
| Q |
7 |
ccattcagtcacattacgaccaaacaaaaacgagcccaatactttaattgctagtggtagacctttagcataatgtagtatctgatctaccaaattttga |
106 |
Q |
| |
|
|||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||| |||||||| | ||||| || | ||||||||| | |
|
|
| T |
33264166 |
ccattcagtcacattacgaccaaacaaatatgaacccaatactttaattgctagtggtagaccattagcatatctcaatatctcatttgccaaattttta |
33264265 |
T |
|
| Q |
107 |
taattactcataataattttctcatctttgaaagcttttcgacaaaataacatgtgagcttcattccaatccaatagtgaaactttgtaaactacatcca |
206 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||| ||||| || |||| ||||||||||||||||||| |
|
|
| T |
33264266 |
taattactcataataattttctcagctttgaaagcttttctacaaaataacttgtgagcttcggcccaattcagaagtgggactttgtaaactacatcca |
33264365 |
T |
|
| Q |
207 |
ctccatacgctttcaatacatgctcatctctagaaatgataataattctactacctggacctaacc |
272 |
Q |
| |
|
|| ||| ||||||||| ||| |||||||| |||||||||| ||||||||||||| |||||||| |
|
|
| T |
33264366 |
ctttatattctttcaatatatgttcatctcttgaaatgataacgattctactacctgcacctaacc |
33264431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 7 - 272
Target Start/End: Original strand, 33306003 - 33306268
Alignment:
| Q |
7 |
ccattcagtcacattacgaccaaacaaaaacgagcccaatactttaattgctagtggtagacctttagcataatgtagtatctgatctaccaaattttga |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| | |||||||||| |||||||| ||||||||| | ||||| |||| ||||||||||| |
|
|
| T |
33306003 |
ccattcagtcacattacgaccaaacaaaaatgagcccaatattgtaattgctaggggtagaccattagcataactcaatatctcatctgccaaattttga |
33306102 |
T |
|
| Q |
107 |
taattactcataataattttctcatctttgaaagcttttcgacaaaataacatgtgagcttcattccaatccaatagtgaaactttgtaaactacatcca |
206 |
Q |
| |
|
||||||| || ||||| |||||| ||||||||||||||||||||||||| |||||| ||| | || ||| |||| ||||||||||| |||||||| |
|
|
| T |
33306103 |
taattacccaatataatgttctcaagtttgaaagcttttcgacaaaataacttgtgagattcggccatattcaagagtggaactttgtaaaatacatcca |
33306202 |
T |
|
| Q |
207 |
ctccatacgctttcaatacatgctcatctctagaaatgataataattctactacctggacctaacc |
272 |
Q |
| |
|
|||||||| | ||||||| |||||||||||||||||||| || ||||||||||||| |||||||| |
|
|
| T |
33306203 |
ctccatactccttcaatatatgctcatctctagaaatgacaacgattctactacctgcacctaacc |
33306268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 7 - 272
Target Start/End: Complemental strand, 33643165 - 33642900
Alignment:
| Q |
7 |
ccattcagtcacattacgaccaaacaaaaacgagcccaatactttaattgctagtggtagacctttagcataatgtagtatctgatctaccaaattttga |
106 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||| ||||| | ||||||||||||||||||| ||||||||| |||||| | | | |||| ||| || |
|
|
| T |
33643165 |
ccattcagttacattacgaccaaacaaaaatgagctcaatattgtaattgctagtggtagaccattagcataacgtagtacatcagatgccaactttcga |
33643066 |
T |
|
| Q |
107 |
taattactcataataattttctcatctttgaaagcttttcgacaaaataacatgtgagcttcattccaatccaatagtgaaactttgtaaactacatcca |
206 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||||| ||| || || ||| || || ||| |||| |||||||||||||||||||| |
|
|
| T |
33643065 |
taattactcataatagttttctcaagtttgaaagcttttcgacaaaacaacttgcaagattctgtctgattcaaaagtggaactttgtaaactacatcca |
33642966 |
T |
|
| Q |
207 |
ctccatacgctttcaatacatgctcatctctagaaatgataataattctactacctggacctaacc |
272 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||||||| | ||||||||| |||||||| |
|
|
| T |
33642965 |
ctccatacactttcaatatatgctcatctctagaaatgataataactatactacctgcacctaacc |
33642900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 122
Target Start/End: Complemental strand, 28869334 - 28869219
Alignment:
| Q |
7 |
ccattcagtcacattacgaccaaacaaaaacgagcccaatactttaattgctagtggtagacctttagcataatgtagtatctgatctaccaaattttga |
106 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||| ||||| | |||||||||| ||||||||||||||||||| |||||| || | ||||||||||| |
|
|
| T |
28869334 |
ccattcagtcacattacgaccaaacaaatatgagtacaatattgtaattgctagcggtagacctttagcataatccagtatcacatttgccaaattttga |
28869235 |
T |
|
| Q |
107 |
taattactcataataa |
122 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
28869234 |
taattactcatgataa |
28869219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 7 - 272
Target Start/End: Complemental strand, 17439391 - 17439126
Alignment:
| Q |
7 |
ccattcagtcacattacgaccaaacaaaaacgagcccaatactttaattgctagtggtagacctttagcataatgtagtatctgatctaccaaattttga |
106 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||| |||||||| ||||||| || | ||||||||||| |
|
|
| T |
17439391 |
ccattcagtcacattacaaccaaacaaaaatgagcccattactttaattgctagtggtagaccattagcatatctcagtatctcatttgccaaattttga |
17439292 |
T |
|
| Q |
107 |
taattactcataataattttctcatctttgaaagcttttcgacaaaataacatgtgagcttcattccaatccaatagtgaaactttgtaaactacatcca |
206 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||||||||| ||| || || |||||| ||| |||| |||||||||||||||||||| |
|
|
| T |
17439291 |
taattactcataataatgttctcaactttgaaagcttttcgacaaaataacttgtaagaatctctccaattcaaaagtggaactttgtaaactacatcca |
17439192 |
T |
|
| Q |
207 |
ctccatacgctttcaatacatgctcatctctagaaatgataataattctactacctggacctaacc |
272 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
17439191 |
ctccatactttttcaatatatgctcatctctagaaatgataatgattctactacctgcacctaacc |
17439126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 134; Significance: 9e-70; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 7 - 272
Target Start/End: Original strand, 8277 - 8542
Alignment:
| Q |
7 |
ccattcagtcacattacgaccaaacaaaaacgagcccaatactttaattgctagtggtagacctttagcataatgtagtatctgatctaccaaattttga |
106 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||| ||||| |||| ||||||| || | ||||||||||| |
|
|
| T |
8277 |
ccattcagtcacattacgaccagacaaaaatgagcccaatactgtaattgctagtggtagaccattagcgtaattcagtatctcatatgccaaattttga |
8376 |
T |
|
| Q |
107 |
taattactcataataattttctcatctttgaaagcttttcgacaaaataacatgtgagcttcattccaatccaatagtgaaactttgtaaactacatcca |
206 |
Q |
| |
|
||||| |||| |||||||||||| ||||||||||||| ||||||||||| |||||| || |||||||||| |||| |||||||||||||||||||| |
|
|
| T |
8377 |
taatttttcatgataattttctcaagtttgaaagctttttgacaaaataacttgtgagactcggtccaatccaacagtggaactttgtaaactacatcca |
8476 |
T |
|
| Q |
207 |
ctccatacgctttcaatacatgctcatctctagaaatgataataattctactacctggacctaacc |
272 |
Q |
| |
|
|| ||| ||||||||| ||| |||||||| |||||||||| ||||||||||||| |||||||| |
|
|
| T |
8477 |
ctttatattctttcaatatatgttcatctcttgaaatgataacgattctactacctgcacctaacc |
8542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 30 - 272
Target Start/End: Original strand, 31149882 - 31150121
Alignment:
| Q |
30 |
acaaaaacgagcccaatactttaattgctagtggtagacctttagcataatgtagtatctgatctaccaaattttgataattactcataataattttctc |
129 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||| || |||||||| |||||||| | | |||| || | |||| ||||||||||| | || |
|
|
| T |
31149882 |
acaaaaacgagcctaatactttaattgctagaggtaggccattagcataccttagtatctcagatgccaacttatcataactactcataata---tgatc |
31149978 |
T |
|
| Q |
130 |
atctttgaaagcttttcgacaaaataacatgtgagcttcattccaatccaatagtgaaactttgtaaactacatccactccatacgctttcaatacatgc |
229 |
Q |
| |
|
| ||||||||||||||||| |||||| ||| ||| ||| || || |||| |||||||||||| ||||||||||||||| ||||||| | |||| |
|
|
| T |
31149979 |
aagtttgaaagcttttcgactaaataattgaagagagtcagtccgattcaggagtggaactttgtaaacaacatccactccatactctttcaagatatgc |
31150078 |
T |
|
| Q |
230 |
tcatctctagaaatgataataattctactacctggacctaacc |
272 |
Q |
| |
|
|| ||||||||||| ||||| |||||||| || | |||||||| |
|
|
| T |
31150079 |
tcgtctctagaaattataatgattctactccccgcacctaacc |
31150121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 171 - 261
Target Start/End: Complemental strand, 31497326 - 31497236
Alignment:
| Q |
171 |
tccaatccaatagtgaaactttgtaaactacatccactccatacgctttcaatacatgctcatctctagaaatgataataattctactacc |
261 |
Q |
| |
|
|||||||||| || | |||||||||||| |||||||||||||| |||||| || |||||| ||||||||||||||||| ||| ||||||| |
|
|
| T |
31497326 |
tccaatccaaaagaggaactttgtaaacctcatccactccatactctttcagtatatgctcgtctctagaaatgataatgattttactacc |
31497236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 23 - 270
Target Start/End: Original strand, 31158776 - 31159020
Alignment:
| Q |
23 |
cgaccaaacaaaaacgagcccaatactttaattgctagtggtagacctttagcataatgtagtatctgatctaccaaattttgataattactcataataa |
122 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||| |||||||| ||||||||| ||||| | | | ||| || | | || ||||||||||| |
|
|
| T |
31158776 |
cgaccaaacaaaaatgatcccaatactttaattgctagcggtagaccattagcataactgagtatgtcaaatgtcaacttatcaaaactactcataata- |
31158874 |
T |
|
| Q |
123 |
ttttctcatctttgaaagcttttcgacaaaataacatgtgagcttcattccaatccaatagtgaaactttgtaaactacatccactccatacgctttcaa |
222 |
Q |
| |
|
| ||| ||||||||||||| ||||||| || ||| | | ||| || ||| |||| |||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
31158875 |
--tgatcaagtttgaaagctttttgacaaaacaattgaagagagttagtcccattcaagagtggaactttgtaaactacatcaactccatactctttcaa |
31158972 |
T |
|
| Q |
223 |
tacatgctcatctctagaaatgataataattctactacctggacctaa |
270 |
Q |
| |
|
| ||| |||||||||||||| |||| |||||||| |||| |||||| |
|
|
| T |
31158973 |
gatatgttcatctctagaaattataacgattctactccctgcacctaa |
31159020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 171 - 272
Target Start/End: Complemental strand, 31490074 - 31489973
Alignment:
| Q |
171 |
tccaatccaatagtgaaactttgtaaactacatccactccatacgctttcaatacatgctcatctctagaaatgataataattctactacctggacctaa |
270 |
Q |
| |
|
|||||| ||| |||| |||| ||||||||||||| ||||||||| ||||||| | ||| ||||||| |||||| ||||| |||||||| |||| |||||| |
|
|
| T |
31490074 |
tccaattcaagagtggaactctgtaaactacatcaactccatactctttcaagatatgttcatctccagaaattataatgattctactccctgcacctaa |
31489975 |
T |
|
| Q |
271 |
cc |
272 |
Q |
| |
|
|| |
|
|
| T |
31489974 |
cc |
31489973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 270
Target Start/End: Original strand, 31029364 - 31029452
Alignment:
| Q |
182 |
agtgaaactttgtaaactacatccactccatacgctttcaatacatgctcatctctagaaatgataataattctactacctggacctaa |
270 |
Q |
| |
|
|||| ||||||||||||| |||| ||||||||| | ||||| | |||||||||||||||||| ||||| |||||||| |||| |||||| |
|
|
| T |
31029364 |
agtggaactttgtaaacttcatcaactccatactcattcaagatatgctcatctctagaaattataatgattctactccctgcacctaa |
31029452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 121
Target Start/End: Original strand, 31527936 - 31528034
Alignment:
| Q |
23 |
cgaccaaacaaaaacgagcccaatactttaattgctagtggtagacctttagcataatgtagtatctgatctaccaaattttgataattactcataata |
121 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||| |||||||||| || |||||||||| |||||||| || |||||| | | ||||||||||| |||| |
|
|
| T |
31527936 |
cgaccaaacaaaaatgagcccaatgctttaatcgctagtggtaagccattagcataatttagtatctcatataccaactcgtcataattactcaaaata |
31528034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 23 - 258
Target Start/End: Complemental strand, 31477518 - 31477286
Alignment:
| Q |
23 |
cgaccaaacaaaaacgagcccaatactttaattgctagtggtagacctttagcataatgtagtatctgatctaccaaattttgataattactcataataa |
122 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||| |||||||| || || |||||||||||||| || ||||| || |||| || ||| |||| |
|
|
| T |
31477518 |
cgaccaaacaaaaatgaacccaatactttaattgcaagtggtaggccattggcataatgtagtatgccattaaccaacccttcataactattcaaaata- |
31477420 |
T |
|
| Q |
123 |
ttttctcatctttgaaagcttttcgacaaaataacatgtgagcttcattccaatccaatagtgaaactttgtaaactacatccactccatacgctttcaa |
222 |
Q |
| |
|
| ||| |||||||||||||||||| ||||| ||| | | |||||||||| || | ||||||||||||| |||| |||||||| ||||| |
|
|
| T |
31477419 |
--tgatcaagtttgaaagcttttcgacacaataattgaagagagttagtccaatccaagagaggaactttgtaaacttcatctactccataattcttcaa |
31477322 |
T |
|
| Q |
223 |
tacatgctcatctctagaaatgataataattctact |
258 |
Q |
| |
|
|| |||||||||||||||||| ||||| ||| |||| |
|
|
| T |
31477321 |
tatatgctcatctctagaaattataatgattttact |
31477286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 31019327 - 31019383
Alignment:
| Q |
23 |
cgaccaaacaaaaacgagcccaatactttaattgctagtggtagacctttagcataa |
79 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| || || |||||| |
|
|
| T |
31019327 |
cgaccaaacaaaaatgagcccaatactttaattgctagtggtaggccattggcataa |
31019383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 258
Target Start/End: Original strand, 31019483 - 31019559
Alignment:
| Q |
182 |
agtgaaactttgtaaactacatccactccatacgctttcaatacatgctcatctctagaaatgataataattctact |
258 |
Q |
| |
|
|||| ||||||||||||| |||| ||||||||| | ||||| | |||||||||||||||||| ||||| |||||||| |
|
|
| T |
31019483 |
agtggaactttgtaaacttcatcaactccatactcattcaagatatgctcatctctagaaattataatgattctact |
31019559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 187 - 261
Target Start/End: Complemental strand, 31502482 - 31502408
Alignment:
| Q |
187 |
aactttgtaaactacatccactccatacgctttcaatacatgctcatctctagaaatgataataattctactacc |
261 |
Q |
| |
|
||||||||||||| ||||||||||| | |||||||| |||||||||||||||||| ||||| ||| ||||||| |
|
|
| T |
31502482 |
aactttgtaaacttcatccactccaaaaaatttcaatatatgctcatctctagaaattataatgattttactacc |
31502408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 31029208 - 31029264
Alignment:
| Q |
23 |
cgaccaaacaaaaacgagcccaatactttaattgctagtggtagacctttagcataa |
79 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||| || || |||||| |
|
|
| T |
31029208 |
cgaccaaacaaaaatgagcccaatactttaatagctagtggtaggccattggcataa |
31029264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 31161187 - 31161238
Alignment:
| Q |
27 |
caaacaaaaacgagcccaatactttaattgctagtggtagacctttagcata |
78 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
31161187 |
caaacaaaaaagagcccaatactttaattgctagtggtaagccattagcata |
31161238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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