View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6873A_low_64 (Length: 290)
Name: NF6873A_low_64
Description: NF6873A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6873A_low_64 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 5e-99; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 41 - 290
Target Start/End: Original strand, 36471767 - 36472008
Alignment:
| Q |
41 |
ctgtgagggctaggatgaaaatgataattgatgctcttcctaataaggcaataagctttctcaccaaatgttgcccaacaagtgcagcaacagtggctac |
140 |
Q |
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| T |
36471767 |
ctgtgagggctaggatgaaaatgataattgatgctcttcctaataaggcaataagctttctcaccaaatgttgcccaacaagtgcagcaacagtggctac |
36471866 |
T |
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| Q |
141 |
aactacaaagtaaagagctgcaagaataatcaagcgttgaatattaaatgttttagagnnnnnnnnnnttcaaatatt-aaaattatccatgcacttacc |
239 |
Q |
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| T |
36471867 |
aactacaaagtaaagagctgcaagaataatcaaacgttgaatattaaatgttttagagaaaa---------aaaaattcaaatttatccatgcacttacc |
36471957 |
T |
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| Q |
240 |
atatggaattggaaaacgtttcagaaggtaatattctaccacagacataga |
290 |
Q |
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| T |
36471958 |
atatggaattggaaaacgtttcagaaggtaatattccaccacagacataga |
36472008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 41 - 189
Target Start/End: Original strand, 36462540 - 36462688
Alignment:
| Q |
41 |
ctgtgagggctaggatgaaaatgataattgatgctcttcctaataaggcaataagctttctcaccaaatgttgcccaacaagtgcagcaacagtggctac |
140 |
Q |
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| T |
36462540 |
ctgtgagggctaagatgaaaatgataattgatgctctccctaataagacaataagctttctcaccaaatgttgcccaacaagtgcagcaacagtggctac |
36462639 |
T |
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| Q |
141 |
aactacaaagtaaagagctgcaagaataatcaagcgttgaatattaaat |
189 |
Q |
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| T |
36462640 |
aactacaaagtaaagagctgcaagaataatcaaacgttgaatattaaat |
36462688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 209 - 290
Target Start/End: Original strand, 36462797 - 36462878
Alignment:
| Q |
209 |
ttcaaatattaaaattatccatgcacttaccatatggaattggaaaacgtttcagaaggtaatattctaccacagacataga |
290 |
Q |
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| T |
36462797 |
ttcaaatattaaatttatccatacacttaccatatggaatgggaaaacgtttcagaaggtaatattccaccacagacataga |
36462878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 103
Target Start/End: Complemental strand, 34070801 - 34070747
Alignment:
| Q |
49 |
gctaggatgaaaatgataattgatgctcttcctaataaggcaataagctttctca |
103 |
Q |
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| T |
34070801 |
gctaggatgaaaatgataatcgaagctttacctgataaggcaataagttttctca |
34070747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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