View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6873A_low_7 (Length: 460)
Name: NF6873A_low_7
Description: NF6873A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6873A_low_7 |
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| [»] scaffold0041 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 411; Significance: 0; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 6 - 460
Target Start/End: Original strand, 87358 - 87812
Alignment:
| Q |
6 |
actgagatgaatatggagtcaaagaagaaatttaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgc |
105 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
87358 |
actgagatgaatatggagtcaaagaagaaattgaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgc |
87457 |
T |
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| Q |
106 |
cagaagttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcat |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
87458 |
cagaagttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcat |
87557 |
T |
|
| Q |
206 |
tccatgtagagttgaagctatacgatatatggctaatcatgagacggatgaagtctatgcaaaactcaggcttgttcctatgaatattaacgaggttagt |
305 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||| |||||||| |
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| T |
87558 |
tccatgtagagttgaagctataagatatatggctaatcatgagaccgatgaagtgtatgcaaaactcagacttgtccctatgaatattaaccaggttagt |
87657 |
T |
|
| Q |
306 |
tttgataatgacggtgttgctggcaccaacgtgtctgaaactaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtg |
405 |
Q |
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||||||||||| ||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
87658 |
tttgataatgatggtgttgctggcatcaacgtgtccgaaacaaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtg |
87757 |
T |
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| Q |
406 |
gtggcttttcttgtcctagatattgtgcagaaacgctttttcctcgtttggacta |
460 |
Q |
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| T |
87758 |
gtggcttttcttgtcctagatattgtgcagaaacgctttttcctcgtttggacta |
87812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 6 - 460
Target Start/End: Original strand, 95388 - 95828
Alignment:
| Q |
6 |
actgagatgaatatggagtcaaagaagaaatttaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgc |
105 |
Q |
| |
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||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||| |||||||||||||||| ||||||| |
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| T |
95388 |
actgagatgaatatggagtcaaaaaagaaattgaaaaatgtgaacaagagtgtgg--------------catgccattgcaggaggaatggtgcaaatgc |
95473 |
T |
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| Q |
106 |
cagaagttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcat |
205 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||| |
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| T |
95474 |
cagaagttaactcacaggtcttttacttccctcagggtcacgccgagcatgcttgtgagccggtgaatttcagtgcttactccaaaattccatctttcat |
95573 |
T |
|
| Q |
206 |
tccatgtagagttgaagctatacgatatatggctaatcatgagacggatgaagtctatgcaaaactcaggcttgttcctatgaatattaacgaggttagt |
305 |
Q |
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||||||||||||||||| |||| |||||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||| |||||||| |
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| T |
95574 |
tccatgtagagttgaagatataagatatatggctaatcatgagaccgatgaagtgtatgcaaaactcagacttgtccctatgaatattaaccaggttagt |
95673 |
T |
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| Q |
306 |
tttgataatgacggtgttgctggcaccaacgtgtctgaaactaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtg |
405 |
Q |
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||||||||||| ||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
95674 |
tttgataatgatggtgttgctggcatcaacgtgtccgaaacaaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtg |
95773 |
T |
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| Q |
406 |
gtggcttttcttgtcctagatattgtgcagaaacgctttttcctcgtttggacta |
460 |
Q |
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||||||||||||||||||||||||||||||||| | ||||||||||| ||||||| |
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| T |
95774 |
gtggcttttcttgtcctagatattgtgcagaaatgatttttcctcgtatggacta |
95828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 411; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 6 - 460
Target Start/End: Complemental strand, 40878925 - 40878471
Alignment:
| Q |
6 |
actgagatgaatatggagtcaaagaagaaatttaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgc |
105 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40878925 |
actgagatgaatatggagtcaaagaagaaattgaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgc |
40878826 |
T |
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| Q |
106 |
cagaagttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcat |
205 |
Q |
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| T |
40878825 |
cagaagttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcat |
40878726 |
T |
|
| Q |
206 |
tccatgtagagttgaagctatacgatatatggctaatcatgagacggatgaagtctatgcaaaactcaggcttgttcctatgaatattaacgaggttagt |
305 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||| |||||||| |
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| T |
40878725 |
tccatgtagagttgaagctataagatatatggctaatcatgagaccgatgaagtgtatgcaaaactcagacttgtccctatgaatattaaccaggttagt |
40878626 |
T |
|
| Q |
306 |
tttgataatgacggtgttgctggcaccaacgtgtctgaaactaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtg |
405 |
Q |
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| T |
40878625 |
tttgataatgatggtgttgctggcatcaacgtgtccgaaacaaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtg |
40878526 |
T |
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| Q |
406 |
gtggcttttcttgtcctagatattgtgcagaaacgctttttcctcgtttggacta |
460 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40878525 |
gtggcttttcttgtcctagatattgtgcagaaacgctttttcctcgtttggacta |
40878471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 6 - 460
Target Start/End: Complemental strand, 40870894 - 40870454
Alignment:
| Q |
6 |
actgagatgaatatggagtcaaagaagaaatttaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgc |
105 |
Q |
| |
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||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||| |||||||||||||||| ||||||| |
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| T |
40870894 |
actgagatgaatatggagtcaaaaaagaaattgaaaaatgtgaacaagagtgtgg--------------catgccattgcaggaggaatggtgcaaatgc |
40870809 |
T |
|
| Q |
106 |
cagaagttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcat |
205 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||| |
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| T |
40870808 |
cagaagttaactcacaggtcttttacttccctcagggtcacgccgagcatgcttgtgagccggtgaatttcagtgcttactccaaaattccatctttcat |
40870709 |
T |
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| Q |
206 |
tccatgtagagttgaagctatacgatatatggctaatcatgagacggatgaagtctatgcaaaactcaggcttgttcctatgaatattaacgaggttagt |
305 |
Q |
| |
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| T |
40870708 |
tccatgtagagttgaagatataagatatatggctaatcatgagaccgatgaagtgtatgcaaaactcagacttgtccctatgaatattaaccaggttagt |
40870609 |
T |
|
| Q |
306 |
tttgataatgacggtgttgctggcaccaacgtgtctgaaactaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtg |
405 |
Q |
| |
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||||||||||| ||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40870608 |
tttgataatgatggtgttgctggcatcaacgtgtccgaaacaaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtg |
40870509 |
T |
|
| Q |
406 |
gtggcttttcttgtcctagatattgtgcagaaacgctttttcctcgtttggacta |
460 |
Q |
| |
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||||||||||||||||||||||||||||||||| | ||||||||||| ||||||| |
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| T |
40870508 |
gtggcttttcttgtcctagatattgtgcagaaatgatttttcctcgtatggacta |
40870454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 362 - 451
Target Start/End: Complemental strand, 40352777 - 40352688
Alignment:
| Q |
362 |
atcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaacgctttttcctcg |
451 |
Q |
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||||||||| || || |||||||| |||||||||||||||||||| || || ||| ||||||||| ||||| |||||| |||||||||| |
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| T |
40352777 |
atcttttgcaaagactttgacacagtctgatgcaaacaatggtggagggttctctgttcctagatactgtgctgaaacgatttttcctcg |
40352688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 378 - 457
Target Start/End: Original strand, 28346744 - 28346823
Alignment:
| Q |
378 |
ttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaacgctttttcctcgtttgga |
457 |
Q |
| |
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||||| ||||||||||| ||||||||||| || |||||| |||||| |||||||| || ||| |||| ||||||||||| |
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| T |
28346744 |
ttgactcaatctgatgctaacaatggtggaggtttttctgttcctaggtattgtgccgagacgattttccctcgtttgga |
28346823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 433
Target Start/End: Original strand, 42730140 - 42730210
Alignment:
| Q |
363 |
tcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgc |
433 |
Q |
| |
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|||||||| || || || |||||||||||||||||||| ||||| || |||||| ||||||||| ||||| |
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| T |
42730140 |
tcttttgcaaagacattaacacaatctgatgcaaacaacggtggaggtttttctgttcctagatactgtgc |
42730210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 416
Target Start/End: Original strand, 21715642 - 21715696
Alignment:
| Q |
362 |
atcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttct |
416 |
Q |
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||||||||| || || ||||| ||||||||||||||||||||||| || |||||| |
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| T |
21715642 |
atcttttgctaagactttgactcaatctgatgcaaacaatggtggggggttttct |
21715696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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