View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6873A_low_72 (Length: 282)
Name: NF6873A_low_72
Description: NF6873A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6873A_low_72 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0096 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 9e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 119 - 282
Target Start/End: Original strand, 32650608 - 32650771
Alignment:
| Q |
119 |
ggaatccaaaggaaaaagtaccagaacgtgaacaatcataatgattaactgaaatcatttcatgaggggtttgtttatatttgtgcaaatatcagaacaa |
218 |
Q |
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| T |
32650608 |
ggaatccaaaggaaaaagtaccagaacgtgaacaatcataatgattaactgaaatcatttcatgaggggtttgtttatatttgtgtaaatatcagaacaa |
32650707 |
T |
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| Q |
219 |
ttctgatccatttatcacggcgataatgcaaattaatgaaaggaaagagtaaacgaattgagat |
282 |
Q |
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| T |
32650708 |
ttctgatccattcatcacggccataatgaaaataaatgaaaggaaagagtaaacgaattgagat |
32650771 |
T |
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Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 12537299 - 12537407
Alignment:
| Q |
18 |
gacatcataccaaaaatcctgagttgacatcagattttggcaaggacttctcaaatgtgtggtaaaacttccttggaagaaagta---aacatcaggggc |
114 |
Q |
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| T |
12537299 |
gacatcataccaaaaaacctgagttgacatcagattttggcaactacttctcaaatgtgtggtaaaacttccttggaagaaagtaaacaacatcaggggc |
12537398 |
T |
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| Q |
115 |
gttaggaat |
123 |
Q |
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| T |
12537399 |
gttaggaat |
12537407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 29283 - 29175
Alignment:
| Q |
18 |
gacatcataccaaaaatcctgagttgacatcagattttggcaaggacttctcaaatgtgtggtaaaacttccttggaagaaagta---aacatcaggggc |
114 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||| |||| |
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| T |
29283 |
gacatcataccaaaaaacctgagttgacatcagattttggcaacgacttctcaaatgagtggtaaaacttccttggaagaaagtaaacaacatcaagggc |
29184 |
T |
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| Q |
115 |
gttaggaat |
123 |
Q |
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||||||||| |
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| T |
29183 |
gttaggaat |
29175 |
T |
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