View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6873A_low_80 (Length: 267)
Name: NF6873A_low_80
Description: NF6873A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6873A_low_80 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 4 - 261
Target Start/End: Complemental strand, 48993753 - 48993496
Alignment:
| Q |
4 |
atagcacttggtgttgtatattgcaacaaaagcacaaacctaaacatagcatcattttcaaccaaaaaattcaacttatcagccaacacaacaactccaa |
103 |
Q |
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| T |
48993753 |
atagcacttggtgttgtatattgcaacaaaagcacaaacctaaacatagcatcattttcaaccaaaaaattcaacttatcagccaacacaacaactccaa |
48993654 |
T |
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| Q |
104 |
ttcctataacaggaagcaccacaagtcttgccacaattatcccaattgtagttttaattccaagtgttgattcatttggtccttcagctagcataccccc |
203 |
Q |
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| T |
48993653 |
ttcctataacaggaagcaccacaagtcttgccacaattatcccaattgtagttttaattccaagtgttgattcatttggtccttcagctagcataccccc |
48993554 |
T |
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| Q |
204 |
tagtataagcatcacacaaggcaccattgcacctgccaaaatttccaaactatctgtc |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48993553 |
tagtataagcatcacacaaggcaccattgcacctgccaaaatttccaaactatctgtc |
48993496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 22623974 - 22624233
Alignment:
| Q |
1 |
aatatagcacttggtgttgtatattgcaacaaaagcacaaacctaaacatagcatcattttcaaccaaaaaattcaacttatcagccaacacaacaactc |
100 |
Q |
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||||||||||| |||| ||| || ||||||||||||||||| |||||||||||||||||||| ||||| ||||| | ||||| | ||| |||||| | |
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| T |
22623974 |
aatatagcactaggtgatgtgtactgcaacaaaagcacaaatctaaacatagcatcattttcgaccaagaaatttagcttattcgacaaagcaacaatcc |
22624073 |
T |
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| Q |
101 |
caattcctataacaggaagcaccacaagtcttgccacaattatcccaattgtagttttaattccaagtgttgattcatttggtccttcagctagcatacc |
200 |
Q |
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| T |
22624074 |
caataccaagaacaggtagcaccaagagtcttgccacaacaataccaatagtagttctaagtccaagtctagactcatttggtccttcagcaagcatacc |
22624173 |
T |
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| Q |
201 |
ccctagtataagcatcacacaaggcaccattgcacctgccaaaatttccaaactatctgt |
260 |
Q |
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||||| ||||||||||||| |||||||||||||||| | ||||| || ||||||||||| |
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| T |
22624174 |
ccctaatataagcatcacagaaggcaccattgcaccacctaaaatctctaaactatctgt |
22624233 |
T |
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