View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6873A_low_85 (Length: 259)
Name: NF6873A_low_85
Description: NF6873A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6873A_low_85 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 21 - 244
Target Start/End: Original strand, 24666621 - 24666844
Alignment:
| Q |
21 |
agttatcaacaccaagaaattggttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattta |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24666621 |
agttatcaacaccaagaaattggttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattta |
24666720 |
T |
|
| Q |
121 |
cagatttcagaggagttgaaaaggatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatctaa |
220 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||| ||||||||| | |
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|
| T |
24666721 |
cagatttcagaggagttgaaaaagatgaagaaatataatagggacaagattgtatgttaaaatgtctagatgttctcaatcttattttcaataaatctca |
24666820 |
T |
|
| Q |
221 |
accattgattcaatcaaacggtat |
244 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
24666821 |
accattgattcaatcaaacggtat |
24666844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 21 - 251
Target Start/End: Complemental strand, 34941782 - 34941551
Alignment:
| Q |
21 |
agttatcaacaccaagaaattgg-ttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattt |
119 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34941782 |
agttatcaacaccaagaaattgggttcctgtcattttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattt |
34941683 |
T |
|
| Q |
120 |
acagatttcagaggagttgaaaaggatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatcta |
219 |
Q |
| |
|
||||||||||| ||||||||| |||||||||| |||||| |||||||||||| ||||||||||||||| |||||||||| |||||||| ||||||||| |
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| T |
34941682 |
acagatttcaggggagttgaagaggatgaagagatataacagggacaagattgtatgttaaaatgtctagatgttctcaactttattttcaataaatctc |
34941583 |
T |
|
| Q |
220 |
aaccattgattcaatcaaacggtatattcttc |
251 |
Q |
| |
|
|||| |||||||||||||||||||| |||||| |
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|
| T |
34941582 |
aaccgttgattcaatcaaacggtattttcttc |
34941551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 21 - 252
Target Start/End: Original strand, 18363426 - 18363653
Alignment:
| Q |
21 |
agttatcaacaccaagaaattggttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattta |
120 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||| |
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|
| T |
18363426 |
agttatcaacaccaagaaattggttcatgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgc--gcgtattctagattta |
18363523 |
T |
|
| Q |
121 |
cagatttcagaggagttgaaaaggatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatctaa |
220 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||| ||||||||| | |
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|
| T |
18363524 |
cagatttcaggggagttg--aaggatgaagaaatataatagggacaagaatgtatgttaaaatgtctagatgttctcaattttattttcaataaatctca |
18363621 |
T |
|
| Q |
221 |
accattgattcaatcaaacggtatattcttcg |
252 |
Q |
| |
|
||||||||||||||| || ||||| ||||||| |
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|
| T |
18363622 |
accattgattcaatcgaatggtattttcttcg |
18363653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 21 - 252
Target Start/End: Complemental strand, 36599502 - 36599275
Alignment:
| Q |
21 |
agttatcaacaccaagaaattggttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattta |
120 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||| |
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|
| T |
36599502 |
agttatcaacaccaagaaattggttcatgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgc--gcgtattctagattta |
36599405 |
T |
|
| Q |
121 |
cagatttcagaggagttgaaaaggatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatctaa |
220 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||| ||||||||| | |
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|
| T |
36599404 |
cagatttcaggggagttg--aaggatgaagaaatataatagggacaagaatgtatgttaaaatgtctagatgttctcaattttattttcaataaatctca |
36599307 |
T |
|
| Q |
221 |
accattgattcaatcaaacggtatattcttcg |
252 |
Q |
| |
|
||||||||||||||| || ||||| ||||||| |
|
|
| T |
36599306 |
accattgattcaatcgaatggtattttcttcg |
36599275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 143
Target Start/End: Complemental strand, 8752465 - 8752390
Alignment:
| Q |
68 |
tttttcattttcaaatggatgtagatgttttctgcaagcatcttctagatttacagatttcagaggagttgaaaag |
143 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||| ||||||| | | | |||| || |||||||||||||||||||| |
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|
| T |
8752465 |
tttttcattttcgaattgatgtagatgttttcagcaagcaacctatggattcactaatttcagaggagttgaaaag |
8752390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 21 - 140
Target Start/End: Original strand, 26240615 - 26240735
Alignment:
| Q |
21 |
agttatcaacaccaagaaattgg-ttcctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattt |
119 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26240615 |
agttatcaacaccaagaaattgggtttctgtcactttcccatatctggtttttcattttcaaatggatgtagatgttttctgcaagcatcttctagattt |
26240714 |
T |
|
| Q |
120 |
acagatttcagaggagttgaa |
140 |
Q |
| |
|
||| |||||| ||||||||| |
|
|
| T |
26240715 |
acatatttcaagggagttgaa |
26240735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 160 - 251
Target Start/End: Original strand, 26240779 - 26240870
Alignment:
| Q |
160 |
agggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatctaaaccattgattcaatcaaacggtatattcttc |
251 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||| |||||| |
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|
| T |
26240779 |
agggacaagattgtatgttaaaatgtctagatgttctcaatattattttcaataaatctcaaccattgattcaatcaaacggtattttcttc |
26240870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 68 - 252
Target Start/End: Complemental strand, 53242900 - 53242714
Alignment:
| Q |
68 |
tttttcattttcaaatggatgtagatgttttctgcaagcatcttctagatttacagatttcagaggagttgaaaaggatgaagaaatataataggg-aca |
166 |
Q |
| |
|
|||||||||| | ||||||| ||||||||||||||| | ||||| ||||||||||||||| | |||||||| |||||||| ||||||||||||| ||| |
|
|
| T |
53242900 |
tttttcatttccgaatggatatagatgttttctgcatgtatcttttagatttacagattttaagagagttgaagaggatgaacaaatataatagggaaca |
53242801 |
T |
|
| Q |
167 |
agatttaatgttaaaatgtctatatgttctc-aattttatttttaataaatctaaaccattgattcaatcaaacggtatattcttcg |
252 |
Q |
| |
|
| ||| | || |||||||||| |||||||| ||||||||||| ||||||||| ||||||||||||||||||| ||||| ||||||| |
|
|
| T |
53242800 |
aaattgtaagtgaaaatgtctagatgttctcaaattttattttcaataaatcttaaccattgattcaatcaaatggtattttcttcg |
53242714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 45 - 196
Target Start/End: Original strand, 43479315 - 43479456
Alignment:
| Q |
45 |
tcctgtcactttcccatatctggtttttcatttt-caaatggatgtagatgttttctgcaagcatcttctagatttacagatttcagaggagttgaaaag |
143 |
Q |
| |
|
|||| ||||||| || | |||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||| | |||||||| | |
|
|
| T |
43479315 |
tcctatcacttttccgtctctgttttttcatttttcgaatggatgtagatgttttctgcaagcatcttctagattt-----------aagagttgaataa |
43479403 |
T |
|
| Q |
144 |
gatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttct |
196 |
Q |
| |
|
||||||||||||||||||| |||| ||| |||| |||||||||| ||||||| |
|
|
| T |
43479404 |
gatgaagaaatataataggaacaatattgtatgtgaaaatgtctagatgttct |
43479456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 81 - 244
Target Start/End: Complemental strand, 19697568 - 19697413
Alignment:
| Q |
81 |
aatggatgtagatgttttctgcaagcatcttctagatttacagatttcagaggagttgaaaaggatgaagaaatataatagggacaagatttaatgttaa |
180 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||| | || ||||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
19697568 |
aatggatgtagatgttttccgcaagcatcttctaaattt-------ttagtggagttgaaaatgatgaagaaatataatagggacaagattgtatgttaa |
19697476 |
T |
|
| Q |
181 |
aatgtctatatgttctcaattttatttttaataaatctaaaccattgattcaatcaaacggtat |
244 |
Q |
| |
|
|||||||| |||||||||||||| |||| || |||||| || ||||||||||||||||| |||| |
|
|
| T |
19697475 |
aatgtctagatgttctcaatttt-ttttcaaaaaatctcaaacattgattcaatcaaacagtat |
19697413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 13265651 - 13265597
Alignment:
| Q |
190 |
atgttctcaattttatttttaataaatctaaaccattgattcaatcaaacggtat |
244 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||| |||| |||||||| |
|
|
| T |
13265651 |
atgttctcatttttatttttaataattctaaaccattgatttaatccaacggtat |
13265597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 131 - 235
Target Start/End: Original strand, 32566462 - 32566563
Alignment:
| Q |
131 |
aggagttgaaaaggatgaagaaatataatagggacaagatttaatgttaaaatgtctatatgttctcaattttatttttaataaatctaaaccattgatt |
230 |
Q |
| |
|
|||||||||| | ||||| |||||||||||||||||||||| |||| ||||||| || ||||||||||||| |||| ||||||||| |||||||| | |
|
|
| T |
32566462 |
aggagttgaataagatga-gaaatataatagggacaagattgtatgtgaaaatgtttagatgttctcaattt--ttttcaataaatcttgaccattgaat |
32566558 |
T |
|
| Q |
231 |
caatc |
235 |
Q |
| |
|
||||| |
|
|
| T |
32566559 |
caatc |
32566563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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