View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6873A_low_87 (Length: 258)
Name: NF6873A_low_87
Description: NF6873A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6873A_low_87 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 5 - 252
Target Start/End: Complemental strand, 41705151 - 41704904
Alignment:
| Q |
5 |
gttgcagccaccaccttggttacccggttcatgtgtcacacaagacatgccggtaagcaatggtatttggttaaatcagtcacttcctttcaacataact |
104 |
Q |
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| T |
41705151 |
gttgcagccaccaccttggttacccggttcatgtgtcacacaagacatgccggtaagcaatggtatttggttaaatcagtcacttcctttcaacataact |
41705052 |
T |
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| Q |
105 |
tcatccaacacagtgttcattttcaactgttcccctcgtctcttggtttctcctcttaactgctcttcctctagtatttgtcaccgttacttggaaaatt |
204 |
Q |
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| T |
41705051 |
tcatccaacacagtgttcattttcaactgttcccctcgtctcttggtttctcctcttaactgctcttcctctagtatttgtcaccgttacttggaaaatt |
41704952 |
T |
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| Q |
205 |
caggtcatgttgacacaaatcgagcacttgagtgtgcaagtggtcttc |
252 |
Q |
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| T |
41704951 |
caggtcaagttgacacaaatcgagcacttgagtgtgcaagtggtcttc |
41704904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 1453340 - 1453265
Alignment:
| Q |
7 |
tgcagccaccaccttggttacccggttcatgtgtcacacaagacatgccggtaagcaatggtatttggttaaatca |
82 |
Q |
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| T |
1453340 |
tgcagccacaaccttggttacctggttcatgtgtcacacaaggcatgttggtaagcaatgatatttacttaaatca |
1453265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 1465032 - 1464957
Alignment:
| Q |
7 |
tgcagccaccaccttggttacccggttcatgtgtcacacaagacatgccggtaagcaatggtatttggttaaatca |
82 |
Q |
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| T |
1465032 |
tgcagccacaaccttggttacctggttcatgtgtcacacaaggcatgttggtaagcaatgatatttacttaaatca |
1464957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 7564146 - 7564110
Alignment:
| Q |
19 |
cttggttacccggttcatgtgtcacacaagacatgcc |
55 |
Q |
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| T |
7564146 |
cttggttacctggttcatgtgttacacaagacatgcc |
7564110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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