View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6873A_low_88 (Length: 258)
Name: NF6873A_low_88
Description: NF6873A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6873A_low_88 |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 11 - 253
Target Start/End: Complemental strand, 17435823 - 17435581
Alignment:
| Q |
11 |
atgaataataccgacacactcaattattttatgtcaaacaaagcctaactctgtcgtttccaggctctctttttgaggtacacagtctcttctacatgct |
110 |
Q |
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| T |
17435823 |
atgaataataccgacacactcaattattttatgtcaaacaaagcctaactctgtcgtttccaggctctctttttgaggtacacaatctcttctacatgct |
17435724 |
T |
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| Q |
111 |
cttgtttcttgtattgctgagaatttcttcagttttacaattcatatgacgcaaaatttcaatttggtgtcagattttatattaatattctttcatatat |
210 |
Q |
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| T |
17435723 |
cttgtttgttatatagctgagaatttcttcagttttacaattcatatgacgcaaaatctcaatttggtgtcagattttatattaatatcctttcatatat |
17435624 |
T |
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| Q |
211 |
ccaatcttgatcatatacttgcatagtactcagcactttttgt |
253 |
Q |
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| T |
17435623 |
ccaatcttgatcatatacttgcatagtactcaacactttttgt |
17435581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 12 - 242
Target Start/End: Complemental strand, 17456897 - 17456657
Alignment:
| Q |
12 |
tgaataataccgacacactcaattattttatgtcaaacaaagcctaactctgtcgtttccaggctctctttttgaggtacacagtctcttctacatgctc |
111 |
Q |
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||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
17456897 |
tgaataatatcaacacactcaattattttatgtcaaacaaagcctaactctgtcgtttccaggctctctttttgaggtacacaatctcttctacatgctt |
17456798 |
T |
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| Q |
112 |
ttgtttcttgtattgctgagaatttcttcagttttacaatt-----------catatgacgcaaaatttcaatttggtgtcagattttatattaatattc |
200 |
Q |
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| T |
17456797 |
ttgtttcttgtattgctgagaatttctccagttttacaattcatacccgtttcatatgatgcgaaatcttaatttgatgtcaaattttatatt-gttttc |
17456699 |
T |
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| Q |
201 |
tttcatatatccaatcttgatcatatacttgcatagtactca |
242 |
Q |
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| T |
17456698 |
tttcatatatccattttttatcatatacttgcatagcactca |
17456657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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