View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6873A_low_89 (Length: 258)
Name: NF6873A_low_89
Description: NF6873A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6873A_low_89 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 7 - 258
Target Start/End: Original strand, 50157005 - 50157256
Alignment:
| Q |
7 |
tcgttagaatttcggaatggtttgaatgcactctaaaagttgatgttggacaagnnnnnnngccgagcagcatattcactggtacattgttatccaaaag |
106 |
Q |
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| T |
50157005 |
tcgttagaatttcggaatggtttgaatgcactctaaaagttgaggttggacaagtttttttgccgagcagcatattcactggtacattgttatccaaaag |
50157104 |
T |
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| Q |
107 |
tcttttatacataacttgaaaactcgtcacttttactgtaactgagttcaattatttaatcgaaatcaagcaattatgatctccaaggcactgtctcggt |
206 |
Q |
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| T |
50157105 |
tattctatacataacttgaacactcgtcacttttactgtaactgagttcaattatttaatcgaaatcaagcaattataatctccaaggcactgtctcagt |
50157204 |
T |
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| Q |
207 |
tggcaaaacataatagagcggagtgcatggatgttggaacttaattgttttg |
258 |
Q |
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| T |
50157205 |
tggcaaaacataatagagcggagtgcatggatgttggaacttaattgttttg |
50157256 |
T |
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